DreEX6022956 @ danRer10
Exon Skipping
Gene
ENSDARG00000055644 | zgc:101788
Description
zgc:101788 [Source:ZFIN;Acc:ZDB-GENE-050320-109]
Coordinates
chr6:39102261-39102892:+
Coord C1 exon
chr6:39102261-39102281
Coord A exon
chr6:39102366-39102534
Coord C2 exon
chr6:39102624-39102892
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATATGAAAAATCTCTTTCAGTTT
3' ss Score
6.1
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTTCACTTTCTCAGTTGAATG
Seq A exon
TTTGTGGACAAGCCCCTCTGAACTCCCGTATTGTAGGGGGTGTAAATGCACCTGAGGGATCATGGCCTTGGCAGGTTAGTCTACAGAGCCCTAGGTATGGTGGTCATTTTTGCGGAGGCTCCCTGATCAGCAGTGAATGGGTGCTGACAGCTGCTCACTGTTTACCTGG
Seq C2 exon
TGTCTCTGAATCCAGTCTTGTTGTGTACTTGGGAAGGAGAACACAGCAGGGAGTCAACACTCATGAAACTAGTAGAAATGTTGCAAAAATAATCGTTCACTCCTCCTACAACAGCAACACAAATGACAATGACATCGCTCTGCTGCGCCTGTCTTCTGCTGTTACCTTCAATGACTATATCAGACCTGTATGTCTGGCGGCCCAGAACAGTGTCTATAGTGCTGGCACCAGCAGCTGGATCACAGGCTGGGGAGATGTTCAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055644-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.9=80.7)
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]