RnoEX6037966 @ rn6
Exon Skipping
Gene
ENSRNOG00000030073 | Prss44
Description
serine protease 44 [Source:RGD Symbol;Acc:1560940]
Coordinates
chr8:119083900-119085517:+
Coord C1 exon
chr8:119083900-119084246
Coord A exon
chr8:119084525-119084681
Coord C2 exon
chr8:119085258-119085517
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTAACCTGCTCCAGCTT
3' ss Score
4.01
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGCGCTGCGACAGGTTGAGGCCTTGGCGGGCGGCATGGCCTTCCAGGGCTGTGACTCCCTCCGCCTCTTGGTCTGGCTCTTGCTGCTTCAGACGCGATTGGGCAAAGCCCCTATGGTTCCAGGGACGCTACCGTCTCTTTCTCCTCTCCCGTCAGAGAATGGCCTCGATGACCCGGGTGTAAACCCACAAGAGAGGCCGCTCACAGGAATGCCTGAGACCTCGCTGCCTCTCAAACCTGGGGGTAGCATGACGCCCTTTGATTCAATGGGATTTACTCCAGGTCACTCTTTTTCATCCATGAGTCTGTCAAGGCAATCATTTCCACCATGGATTCCACCCACTTCAG
Seq A exon
CTTGTGGCCACAGAACTGCGAGGATAGTTGGTGGAAAGCCTGCGCCCATAAGGAAGTGGCCCTGGCAGGTGAGCCTGCAGGTCCACAAGCAGCACATCTGTGGTGGCTCCCTCATCAGCAAATGGTGGGTGATGACCGCAGCCCACTGTGTCTACGG
Seq C2 exon
CCATCTGGATTACGTAGTGTCGATGGGAGAGGCTGACCTGTGGTCCAGTATGTCAGTGAAGATTCCAGTTCAAGACATCATTGTCCACCAAGATTACTCTGTGATGAGAACAATTGTACACGACATTGCCCTTGTTCTGCTGGCCTTCCCCGTGAATTACAGTGTCAACATCCAGCCTGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCGGGGACCCTATGCTGGGTGACTGGATGGGGCAAAACAATTGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030073-'0-3,'0-0,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.2=83.0)
C2:
PF0008921=Trypsin=FE(38.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCTTTCTCCTCTCCCGT
R:
CCTCTCCCATCGACACTACGT
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]