DreEX6102968 @ danRer10
Exon Skipping
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:28994656-28995052:-
Coord C1 exon
chr25:28994992-28995052
Coord A exon
chr25:28994812-28994902
Coord C2 exon
chr25:28994656-28994714
Length
91 bp
Sequences
Splice sites
3' ss Seq
GACTCTGTTTGGTTTATAAGGGT
3' ss Score
5.76
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
GTATCTATTCAGTGGAGCTAGTAAACGATAGCCTGTATGAGTGGCATGTCAAGTTAAGGAC
Seq A exon
GGTTGATCCAGACAGTCCCTTACACAGCGACCTACAGGTTTTGAAGGAAAAAGAAGGAATGGACTACATTCTGCTCAATTTCTCTTATAAA
Seq C2 exon
GATAACTTTCCTTTTGATCCTCCCTTCGTACGGGTTGTGTCTCCTGTCCTGTCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
PF0017921=UQ_con=FE(19.2=100)
C2:
PF0017921=UQ_con=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTATTCAGTGGAGCTAGTAAACG
R:
CCTCCAGACAGGACAGGAGAC
Band lengths:
119-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]