GgaEX1061648 @ galGal3
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
NA
Coordinates
chr10:4445607-4448441:-
Coord C1 exon
chr10:4448381-4448441
Coord A exon
chr10:4445990-4446080
Coord C2 exon
chr10:4445607-4445665
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGCCTCTCTTATAGGGT
3' ss Score
10.8
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGATATATTCAGTGGAACTGGTAAATGACAGCTTGTATGAATGGCATGTTAAGCTTCTAAA
Seq A exon
GGTTGATCCTGACAGCCCTCTGCATAGTGATCTTCAGGTCTTAAAAGAAAAAGAAGGTGTAGAATACATTTTACTCAACTTCTCTTTTAAG
Seq C2 exon
GATAACTTCCCGTTTGATCCTCCCTTTGTGCGAGTAGTATCTCCTGTGCTCACAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.8=100)
A:
PF0017921=UQ_con=FE(19.2=100)
C2:
PF0017921=UQ_con=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCAGTGGAACTGGTAAATGACA
R:
TGTGAGCACAGGAGATACTACTCG
Band lengths:
111-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]