GgaEX1061648 @ galGal4
Exon Skipping
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3003738-3012584:-
Coord C1 exon
chr10:3012500-3012584
Coord A exon
chr10:3004121-3004211
Coord C2 exon
chr10:3003738-3003796
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGCCTCTCTTATAGGGT
3' ss Score
10.8
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGCAGTCTCTGGGTCAGTTCAGGCTTCAGATCGACTTATGAAGGAACTCAGGGATATATATAGATCACAGAGCTATAAAACAG
Seq A exon
GGTTGATCCTGACAGCCCTCTGCATAGTGATCTTCAGGTCTTAAAAGAAAAAGAAGGTGTAGAATACATTTTACTCAACTTCTCTTTTAAG
Seq C2 exon
GATAACTTCCCGTTTGATCCTCCCTTTGTGCGAGTAGTATCTCCTGTGCTCACAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PU(10.9=58.6)
A:
PF0017921=UQ_con=FE(19.2=100)
C2:
PF0017921=UQ_con=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGTCTCTGGGTCAGTT
R:
AGCACAGGAGATACTACTCGCA
Band lengths:
135-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]