DreINT0000010 @ danRer10
Intron Retention
Gene
ENSDARG00000008835 | A2ML1 (1 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3655002-3655314:-
Coord C1 exon
chr3:3655191-3655314
Coord A exon
chr3:3655124-3655190
Coord C2 exon
chr3:3655002-3655123
Length
67 bp
Sequences
Splice sites
5' ss Seq
TTGGTTGGT
5' ss Score
2.01
3' ss Seq
TCAATTGATATCTATTGTAGGAA
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTTCAAGTAACTCCAACACCATCCTCCAACTTCACTCTTAAATCTCTTGATGATCAGGATTCATCCACTATCTCTGCCAATGGGAGAAAGACCTTCAAATGGGCTTTAACTGCTTCTGTTATTG
Seq A exon
GTTGGTTTTTGACTTTAATTGAAAGTGGGATAATATGAGGCTGTTGCTCAATTGATATCTATTGTAG
Seq C2 exon
GAACTTTAAATGTTACTGTCAGTGGCGAGGCCAGTCCGTCCCAGGAATTGTGTGGCAATCAGGATGTGACCGTACCTTCAAGAGGACGCATTGACATAGTCACTCGAAGTCTGCTGGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008835:ENSDART00000021286:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(5.6=11.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAATGGGAGAAAGACC
R:
ACCAGCAGACTTCGAGTGACT
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]