DreINT0000068 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21056089-21056477:-
Coord C1 exon
chr15:21056372-21056477
Coord A exon
chr15:21056261-21056371
Coord C2 exon
chr15:21056089-21056260
Length
111 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGG
5' ss Score
4.99
3' ss Seq
TTTTTTTTTCCTTCTTTAAGGTG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTGCCAAAAAATAGTCCACAGCTCTACACAATACAAATGAAGCAAGCCTTTCCTGTGAGAAGTCTAAGACCTGCTGTTATCAAAGTCTATGACTACTATCAAACAA
Seq A exon
GTATGGTTTCATCTCTTCTCACGATTCTTAACCTGATTTATATTACTGATATTTTATTTTATATTTTATTTTACTCTATCTTGTTTTTTTGTTTTTTTTTCCTTCTTTAAG
Seq C2 exon
GTGATCAGTCAGAGACGTTGTATTCATCACCCTGCGCCTGATGCTTCTGGATGCTGATCCTAAAATCCTTTTTTAACCCGTCTATGCAATTCATGGCCTGTTGCTAATAAAATGAAAGAAATTCTTTATTGTTTGTGGTGTAAAATGAATAAACAGAGAATTATAGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.5=100)
A:
NA
C2:
PF076779=A2M_recep=PD(7.7=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACAGCTCTACACAATACA
R:
TCTCTGTTTATTCATTTTACACCACA
Band lengths:
253-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]