MmuINT1023738 @ mm10
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121887415-121888604:+
Coord C1 exon
chr6:121887415-121887517
Coord A exon
chr6:121887518-121888562
Coord C2 exon
chr6:121888563-121888604
Length
1045 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGAATCCCATCTCTTTCAGATG
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTGACCAATCAGACACTGGCCTTCTCCTTCATCATTCAACAAGATATCCCAGTAAGGAACCTGCAGCCTGCCATTGTGAAAGTCTATGACTACTATGAGACAG
Seq A exon
GTGAGCCAGAAATGGTGATGGACCCTTGTGGTTTTGTTTTACTTACAGTTCCTCAGTATGTAGACCAAGCTGGACCAAAATCTCAGACCTCTATATTCAGTGTCCCAAATGCTGACATTTCAGGAATATGGCATCATACCCACTGTTAAAAGCAATTTTTTTCAACCACTGACCCATTATATAGGTAAGACAACCATTTATCAAATTTGAGTTTATTCATCTACTGATGCCTTATTCCTGTTTGTCCAAGCAACCATGTGGGATCAAACATGTTCACATAACCAAAGGGACCAAAAGTTTTAAAAAATAAGTCCTCTAGGTTTAAAGGCACACAACACTTCCTATTAACACAGCAATGGGAAGATAAGGAATTGTACAAATAATTACAGAAGTTATAAAAAGATGAGAGAGAACTGTAGTCTGTGCGCACAGTGGTGACCAAAGATATACAACAAAGCCAGAGCTGTGGAATTAAATGGGGGATTTCCTATCAAGTGAAGAGATATACCAAATGTTTCAGACTGGAATAATTCAAGAAAATTTGAAGGAAAACCAGAAACAGCACAGAATCTGGAAGGATATATGTGTAAAATTACCCCAACTGTGACTCTACTCAAATACTGTAGAAGAAGCACACTTGGATTTTCTCCACAGGGTGAAAGATTCCAGTATTGGTATATGTTTGATTCTTTATTCAGTGAGAGGCTGGCACAGTACTGTGTCTGTGGAAGTCTGAGGGCCATTGAGGTAAATGTGTTCTCTCCTGCCATGTGGATCCTGAAGACTGAACTCACTAAGGTCATACGACATGTCAGCAAGCACTCTTGCCCACTGAGCCATCTTGCTGGCCCAGGGTAAAAGTATCAACCAGTAGCTTGAAGGGAAGAAATTCCCTTGTTTGGTTTGTCTGATGTCCCCAGAGAGATGACTTTTAAGCAATCATCCAGGTCCTGATTGAGGAAAGTAGTCAGTCCTAACACATCACCCTCCATAACCTCCTCTCTCAAAACCTCCCATTCTCAAGTTTGAATCCCATCTCTTTCAG
Seq C2 exon
ATGAAATGGCTTTTGCTGAATACAGCAGCCCCTGCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908:ENSMUST00000032228:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types