HsaINT0135687 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9302157-9303342:-
Coord C1 exon
chr12:9303240-9303342
Coord A exon
chr12:9302199-9303239
Coord C2 exon
chr12:9302157-9302198
Length
1041 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACCCAACGTTATCTTTCAGATG
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTGACAAATCAGACGCTAAGTTTTTCCTTCATGGTTCTGCAAGACATCCCAGTAGGAGACTTGAAGCCAGCAATTGTTAAAGTCTATGATTACTATGAGACAG
Seq A exon
GTGAGTGAAAGAAAAATGAAACAATCTTAACCAGAGCCAAGAAATGGATCCTGTTGTGACAGTTGATCCTCTTCTTAGCCCACTTAGTCAACATTAATCTTTTGTTTCTTTCCTCCAAGATGTACACTATAAAAACGACTTACTACAGTCTGGCCAACATAGCAAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGTGTGTGCCTGTAATCCCAGCTACTATGGAGGCTGAGGCAGGAGAATCGTGTAAGCCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACGCCATTGCACTCCAGCCCAGGTGACGGTGCGAGACTCCGTCTCAAAAAAAAGAAAAAACAACACAAAACAAAACAAAAACTTACTGAACAAATTTATCAATTAGTGTTTCTTGAGTCAGAAACTTAAGAATTAAAAAGAATGATAATATATAGTCACTGCTTTCAAGTAGTTTAGAGACATAGATAACATAATACAGATAAAAATATTACATAACAGGAAAGACTATTAGTGACAAATGAGTGTTAGTGAGCTAAGCAATAAGTTTGAGAGGCAAAAACAGCACAGAAGGCTGGTGCTCAGGAAGAACAAACAGGAAGAAAGATCTGATTTGGATCCTAGAGGATGAGTGGAGTTTTGGGGGTCTATAGAAGTAGGAGGAGTGTTTCAAGCTGGAACAATAATCTTTGAAAAGTAATTAAGGGAGCAAGCTGAACAAAGTGAATAGAAGCAGAGAGGTCATGGAAGAGAGAACTACAGGTTAGTGCAATTATGATCATCTTCCCAAGAATTTAAAATTTGAACAGCTGCCATCTGAACAGGCTTCAGTCCCCATCTCCAGTCTCAGGGAAAGAGAATATAAATATGTTAATGATCCTGTTTAATTCTTGTCTATTTACATGAAGTTTTGACAATTCTGATAGGGCGTGCTTTTCTCCAGTAGTAAAGTGACTAGACAGATTTAGCATGGTCCCTAGTTCATAGATCTTTCGTTTCTTCCTTCACCCAACGTTATCTTTCAG
Seq C2 exon
ATGAGTCTGTGGTTGCTGAGTATATCGCCCCCTGCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)