GgaINT0103712 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75710370-75710682:+
Coord C1 exon
chr1:75710370-75710472
Coord A exon
chr1:75710473-75710640
Coord C2 exon
chr1:75710641-75710682
Length
168 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TCTTCCCTTCTGTTTTTCAGACG
3' ss Score
9.86
Exon sequences
Seq C1 exon
CTGAGCAACGTGACCTTGAGCTTCTCCTTCACGGTGGAGCAGGACATCCCTGTGCAGGGCCTGAAGCCAGCTCAGGTGAAGGTGTACGATTACTATGAGACAG
Seq A exon
GTAAGCATGGGGCTGAGGGTGTCTCGGGGAGTGACTGTGGGGAGTTGGATTCATGGAGGTGCCTGCGAGCTATGGAAACCCACAGCTGTCCCTGGCACTTGTCCCACTGCACTCCTGGGAGAGGGACCTCTGACAGCCCTGCTCTCTCTCTTCCCTTCTGTTTTTCAG
Seq C2 exon
ACGAATTTGCCATACAGGAGTACAGTGCTCCCTGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCAACGTGACCTTGAGC
R:
GCAGGGAGCACTGTACTC
Band lengths:
138-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]