DreINT0000039 @ danRer10
Intron Retention
Gene
ENSDARG00000078183 | A2ML1 (10 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3683182-3683393:+
Coord C1 exon
chr3:3683182-3683287
Coord A exon
chr3:3683288-3683352
Coord C2 exon
chr3:3683353-3683393
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
TGCTCTGCTTCTTTTTTCAGGTG
3' ss Score
13.03
Exon sequences
Seq C1 exon
GTTCCCAAAGGTGTTCCAGTGACCTTCAGTATACAGCTGACACAGACTGTTGCAGTGCAGAATCTCAAGCCAGCGGTCATCAATATCTATGACTATTACCAGAGAA
Seq A exon
GTATGTTTGTTATAATTGAGCTGAATTTACTGTAGCTGGCACTCATGCTCTGCTTCTTTTTTCAG
Seq C2 exon
GTGACAGTTTTGAGACCGCCTACAAGTCCCCCTGTCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078183:ENSDART00000158885:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.9=100)
A:
NA
C2:
PF076779=A2M_recep=PD(7.8=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGGTGTTCCAGTGACC
R:
TCATGGACAGGGGGACTTG
Band lengths:
144-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]