DreINT0000072 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21075974-21076253:-
Coord C1 exon
chr15:21076169-21076253
Coord A exon
chr15:21076086-21076168
Coord C2 exon
chr15:21075974-21076085
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTGTATGCAAATATTTGTAGATA
3' ss Score
4.49
Exon sequences
Seq C1 exon
TTTTACCCAAGTTTGATGTCACTATAAAACAACCAGAGACACAGAGTATTGGTGACAATGAAATAAAAATTGAGGTTTGTGGGAA
Seq A exon
GTGAGTAACATTTTTCTAATTTTTAATTATTTTATCTCTGCAGTGTTATCAGTGTTGACCTTGTTGTATGCAAATATTTGTAG
Seq C2 exon
ATACACCTACGGCCAGCCTTTACCTGGTAATGCATGGGTGGAAGTATGCCGTGATTCATTTAAATATGTTTCTATTCCTGAAGTTCATCTGTGTTTGAACAAAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGAGACACAGAGTATTGGT
R:
TGAGCAGTTTTGTTCAAACACAGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]