DreEX0000017 @ danRer10
Exon Skipping
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21075429-21076511:-
Coord C1 exon
chr15:21076346-21076511
Coord A exon
chr15:21076169-21076253
Coord C2 exon
chr15:21075429-21075538
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTGCTACTGTCCAGTTT
3' ss Score
5.62
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GACAGCCAAGATAACAGGATTGGTCAATGGACAAATGTTTCGTCAACAAGGTGGATTTTGCAGCTTTCTCATGAGTTGAACCCAGAAGCCCGTCAAGGACTCTACAAACTAAAGGCTTATATTGGTGAAAGGATGATCTCAAATGGTTTTGAAGTGAAAAATTATG
Seq A exon
TTTTACCCAAGTTTGATGTCACTATAAAACAACCAGAGACACAGAGTATTGGTGACAATGAAATAAAAATTGAGGTTTGTGGGAA
Seq C2 exon
ACATCGTCATGACGAAATCTGAAACCATATCCCTGACATATGAACTCGGAAAGGTGACATTTGCTGAGCTTCCTGATTTGTTTGAACATGGATCCATTATAGAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199_MULTIEX1-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(54.8=91.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTTGAACCCAGAAGCCC
R:
GGAAGCTCAGCAAATGTCACCT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]