DreINT0000074 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21075429-21075885:-
Coord C1 exon
chr15:21075765-21075885
Coord A exon
chr15:21075539-21075764
Coord C2 exon
chr15:21075429-21075538
Length
226 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AAACATTATTTTTTACACAGACA
3' ss Score
5.01
Exon sequences
Seq C1 exon
ATGAATGAGTTGGGTTGTGCATCTTTTATCTTCAATACATCAGCCTTTCTGAACTCTACTTTTGAGAATGATCTACAAAATTCTCTTCTAGTTAATACAAATGTCACTGAAGAGGGAACAG
Seq A exon
GTGAGCTGTAGCATTAGTTGCTTTTCCACTTCTGGTCCAGTGCAAGCCACGGCATTCACTGGGACTCAAGCAGCGAGGCCGAAATCATTCTGCAATTTTACTGTAGGGGCAATAGCCCGCAGTGCAGCATAAAACCCTATTCTAATTACTGACCCCTATCCCTATGAATATTGCTCATGTTATATGAAGTTTAAATGTTCTTATTGAAACATTATTTTTTACACAG
Seq C2 exon
ACATCGTCATGACGAAATCTGAAACCATATCCCTGACATATGAACTCGGAAAGGTGACATTTGCTGAGCTTCCTGATTTGTTTGAACATGGATCCATTATAGAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGAGTTGGGTTGTGCA
R:
TCCCTCTATAATGGATCCATGTTCA
Band lengths:
228-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]