DreEX0000018 @ danRer10
Exon Skipping
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21075429-21076253:-
Coord C1 exon
chr15:21076169-21076253
Coord A exon
chr15:21075974-21076085
Coord C2 exon
chr15:21075429-21075538
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTGTATGCAAATATTTGTAGATA
3' ss Score
4.49
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTTTACCCAAGTTTGATGTCACTATAAAACAACCAGAGACACAGAGTATTGGTGACAATGAAATAAAAATTGAGGTTTGTGGGAA
Seq A exon
ATACACCTACGGCCAGCCTTTACCTGGTAATGCATGGGTGGAAGTATGCCGTGATTCATTTAAATATGTTTCTATTCCTGAAGTTCATCTGTGTTTGAACAAAACTGCTCAG
Seq C2 exon
ACATCGTCATGACGAAATCTGAAACCATATCCCTGACATATGAACTCGGAAAGGTGACATTTGCTGAGCTTCCTGATTTGTTTGAACATGGATCCATTATAGAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGTTTGATGTCACTATAAAACA
R:
TCCCTCTATAATGGATCCATGTTCA
Band lengths:
187-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]