DreINT0000259 @ danRer10
Intron Retention
Gene
ENSDARG00000095180 | ABR (2 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61948324-61948585:+
Coord C1 exon
chr5:61948324-61948410
Coord A exon
chr5:61948411-61948475
Coord C2 exon
chr5:61948476-61948585
Length
65 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACG
5' ss Score
2.49
3' ss Seq
GACTTTTATTTTCTTTTTAGATT
3' ss Score
10.41
Exon sequences
Seq C1 exon
CTGGACCCACAGACGGTGCAGTCCAAAAACTGGCACATGGATGTCATAGAAATGAACGGGGTACGGATTTACTTCTCATCAAATATG
Seq A exon
GTGACGCTGATTGAGTTTTTGCCCTGCATCTGATGTCCTATCTATGACTTTTATTTTCTTTTTAG
Seq C2 exon
ATTAAAGTAGAGTTTTCGATGAAGTTTACAAGCCGAGACTTGAGCTTGAAGCGGACGCCGTCTAAGAAACAGAGCGGCGTGTTTGGAGTCAAAATCAGCGTGGTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095180:ENSDART00000132054:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCCAAAAACTGGCAC
R:
ACCACGCTGATTTTGACTCCA
Band lengths:
176-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]