BtaINT0012214 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22422403-22422843:+
Coord C1 exon
chr19:22422403-22422462
Coord A exon
chr19:22422463-22422733
Coord C2 exon
chr19:22422734-22422843
Length
271 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCTGCCTTGCCCCCAACCAGATC
3' ss Score
7.89
Exon sequences
Seq C1 exon
CTGGATCCACAAACTGTAGAAACCAAGAACTGGCACACCGATGTGATTGAGATGAATGGG
Seq A exon
GTGAGTCGGGCGAGACTGGAAGTGTCTGCGCAGTGGGTGGGCGGCCGAGCCTCTGGCTGGTGCCCTGGGGTGCTGTCCCTCCCCCAACCCACCCACCCCCTGCCCCCTTCATCCAGCCCCTCCCCCCTCTCCTCTACCTGCACCCTTCCCATTCCCACCCTGTGAGTGTTTCAGGGAGCCCCCGGGTGCAGTCCTGGGGGGCCCCTGTGTTGGGGGGCACTCCTTGGGCACTCATGCCCTGGGGGGTTGTGCCTGCCTTGCCCCCAACCAG
Seq C2 exon
ATCAAAGTGGAATTCTCCATGAAATTCACTAGCCGAGACATGAGCCTGAAGAGGACCCCCTCCAAAAAGCAGAGCGGCGTCTTCGGTGTGAAGATCAGCGTGGTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424:ENSBTAT00000011083:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCACAAACTGTAGAAACCA
R:
GGTCACCACGCTGATCTTCAC
Band lengths:
167-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development