RnoINT0011423 @ rn6
Intron Retention
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64573294-64573705:-
Coord C1 exon
chr10:64573646-64573705
Coord A exon
chr10:64573404-64573645
Coord C2 exon
chr10:64573294-64573403
Length
242 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CTACTCAACCCCCTGACCAGATC
3' ss Score
4.5
Exon sequences
Seq C1 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGATGTGATTGAAATGAATGGG
Seq A exon
GTAAGGACATCTGAATCACATGCCATCCCTCCTGCCATCCTTCCCTGGGTGCTAGGCTGCCTGCACCTCCCTCAGACCAGTGTTCTCCTCTCTTTGGCCACTTCCTTCCCCATCCCAGCTGCAGGTGCGCATGGAGCCCTGCCAGCGCGGGGTAGCCCTGTTTGCAGTCTTGGGGAGAGAGACCCTATGTTTGGTGATACTCATTCCCTGGGGGATTTGTACCTACTCAACCCCCTGACCAG
Seq C2 exon
ATCAAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACTCCATCCAAAAAGCAGACAGGTGTCTTCGGAGTGAAGATCAGTGTGGTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837:ENSRNOT00000080703:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCACAGACAGTAGAAAGC
R:
CACCACACTGATCTTCACTCCG
Band lengths:
164-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]