GgaINT1005255 @ galGal4
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6336475-6336761:+
Coord C1 exon
chr19:6336475-6336534
Coord A exon
chr19:6336535-6336651
Coord C2 exon
chr19:6336652-6336761
Length
117 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
AGAGATGGTATCTCCCGTAGATC
3' ss Score
5.36
Exon sequences
Seq C1 exon
CTGGACCCACAGGCTGTGCAGACCAAGAACTGGCACATGGACGTGATTGAGATGAATGGG
Seq A exon
GTAAGCAGGGCCAAAGCCCCTTCCTTGGGGTGGGATTGTTGGTTCCTCCCCAAGGGGAGCTGCCAGCTGGGGTCCGGGCTGTGGGGCTATGTGACACAGAGATGGTATCTCCCGTAG
Seq C2 exon
ATCAAGGTGGAGTTCTCCATGAAGTTCACAAGCAGAGACATGAGCCTGAAGAGGACCCCGTCCAAAAAGCAGACCGGAGTCTTTGGAGTCAAAATCAGCGTCGTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCTGTGCAGACCAAG
R:
TTGTCACGACGCTGATTTTGAC
Band lengths:
162-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]