MmuINT0009172 @ mm9
Intron Retention
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76238416-76238828:-
Coord C1 exon
chr11:76238769-76238828
Coord A exon
chr11:76238526-76238768
Coord C2 exon
chr11:76238416-76238525
Length
243 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TACTCAACCCCCTTGACCAGATC
3' ss Score
4.12
Exon sequences
Seq C1 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGACGTGATTGAAATGAATGGG
Seq A exon
GTAAGGACATCTGAACCACATGCCATCCCTCCTGCCACCCTCCCCTGGGTGCTAGGCTGCCTGCGCCTCCCTCAGACCAGTATTCTCCTCTCTTTGGCCACATCCCTCCCCATCCCAGCTGTAGGCGCATGGAGCCCTGCCAGCTCGGGGTAGCCTTGCTTGTGGTCTTGGGGAGAGAGAGGCCCTGTGTTCGGTGATACTCATTCCCTGGGGGATTTGTACCTACTCAACCCCCTTGACCAG
Seq C2 exon
ATCAAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACCCCATCCAAAAAGCAGACAGGCGTCTTTGGAGTGAAGATCAGCGTGGTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-Abr:NM_198018:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCACAGACAGTAGAAAGC
R:
CACCACGCTGATCTTCACTCC
Band lengths:
164-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: