DreINT0001909 @ danRer10
Intron Retention
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30576038-30577720:+
Coord C1 exon
chr8:30576038-30576097
Coord A exon
chr8:30576098-30577610
Coord C2 exon
chr8:30577611-30577720
Length
1513 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
3' ss Seq
ATATTCATCACTCTTTCCAGATT
3' ss Score
7.74
Exon sequences
Seq C1 exon
CTGGATCCGCAGTCGCTGCAGGGTAAAGACTGGCAGAGGACAGTAATCAGCATGAATGGG
Seq A exon
GTCAGTGTGGCTCATCCTGCACAATAATAACACATTTACTAATAATAGGAGCAATCACGTTAATGTTCAAAAGGCCATTTACATTCAATTAGGATGGTGTGCTGGTATTTTGGCTGGTATAGGCCTGTCATGGAGCAATAATTATATTAAAGGGATAGTTCAGCCAAAAAAATGAAAATTATTTATTCAGCCTCAAGTAGTTTCAGACATTTATGGGTTTCCTTTTTTCTGTTGAACACAAAAAATATATATTTTGGAGAATGCTAGAAGCAAGTAACCATTGACTACATATCTCATGGTAGAAGTCAATGGCTGTTGTTTCCAACATTCTTCAAAATATCTTCTTTTGTTTTTGTTAAATAAGACAATAATGATATTGTCTTAGACTATAAATACCAGCCTGATCTGTCGAGAAAAGATCAGTATTTTACGTTTTGTCAGTTAAGTGGCTAATTCCTATGAGTTTGGTTGTATGAAAATTTACGATTTTAAAACTATCATACTAAATTGTGCGAATTAGATCATACAATTATCAAACAGTTTATTTATTAACAATTATCAAATTATCAAACTAAATCAAACAGTTATGAACTGCCATGAGATTGCGATGATAAATACACACCCCTAACATGTAAGTACCTGTACATGTATGATATTTGTTCGAGTTGAGTAAGATATTTAAGATTTGTAGGTATTTCTTTTCCTAAAGCTGTCTATGTTTTAAAAGATGTAGTCTGTCAAAATAATAACTAAACTAAATCACTATTTTCTGTCCAGATATTTATGTGCTCAAGTACTTGCTTGTAGAAATGTTTGAAAAATATTTATGCATGAATGAATTCATGTATTTATAGGGTTTGTTTTAAACTTAAGCTTTTATTTGTTTCATCAAAAATAGCAGGCGTACTCTGGTACTATAATTCAAAATAAGTGTTTTCTATTTGGATATATCTTAAACTATAATTATTTGTCCATTTTAAGCATAATTATCACAGTCTTCAGTGCGACATAATCCTTTAGTAAAGGTGAAAATAACCTATTCATTTGGTGCTTAGGAATATAGCCGGATTATCAATTGAAAACAGTTGTGCTGGTTCATATTTTTTGTGTAGACAGTAATACATTTATTTTCCAAGACTAATAAATTTAGCATATTTATTAAATTAGTCTTTCATAATAATGTGAAAATATTTATGATCGTTTAAAATATATAAAAGTGACATATCAGGTGTGAAAATATAGACATAAGTTCTTAAAATATGTCATATACCTCCATCAGTACATGAATCCATTAACATCCTCCAATCATTAGTTAACAATTATTTGTCTCCCATAATATGAAGCACACCGATGGATTAAATTCATGTGGCTTGATATTAAGCTGATGGACGAAGCTTACATTGATTTAATTCTTGATTATTTGATAGGTGAGATTGAGTACAGAGCTGTTTTGTTCTCATCAGTGAGTGTTTTTGTGGAAAAAAAACTTGTGCATATTCATCACTCTTTCCAG
Seq C2 exon
ATTGAGGTCAAGCTGTCTATGCGATTTACCAGCAGAGAGTTCAGTCTGAAGCGGATGCCCTCCAGAAAACAGTCTGGAGTGTTTGGAGTCAAAATCGGGGCCGTCACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329:ENSDART00000137009:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]