GgaINT0008636 @ galGal4
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8585857-8586148:-
Coord C1 exon
chr15:8586089-8586148
Coord A exon
chr15:8585967-8586088
Coord C2 exon
chr15:8585857-8585966
Length
122 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
AGCTGCTCTCTTCTGTTCAGGTC
3' ss Score
9.19
Exon sequences
Seq C1 exon
CTGGACCCACAGACACTGCAGGACAAAGACTGGCAACGCACAGTCATCTCAATGAATGGA
Seq A exon
GTAAGTACAGCAAACAGCACTGCTTCCGCACCTCTGATGTGGTTCATGTCTTTGCTGTTCGTTGCAGAATAAAAAAAGGGAAGAAAATGTTTGAAATGTAACAGCTGCTCTCTTCTGTTCAG
Seq C2 exon
GTCGAAGTGAAGCTGTCAGTGAAGTTTACCAGTCGAGAGTTCAGCCTGAAGAGGATGCCATCACGGAAACAGACGGGGGTCTTTGGGGTCAAGATTGCTATTGTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGACACTGCAGGACAAA
R:
TGGTGACAATAGCAATCTTGACCC
Band lengths:
163-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]