RnoINT0025274 @ rn6
Intron Retention
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14427797-14429011:-
Coord C1 exon
chr20:14428952-14429011
Coord A exon
chr20:14427907-14428951
Coord C2 exon
chr20:14427797-14427906
Length
1045 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
GCCTCTCTTTTCTTCTGCAGATC
3' ss Score
12.96
Exon sequences
Seq C1 exon
CTGGACCCCCAAACCCTCCAGGACAGAGACTGGCAGCGGACTGTCATCGACATGAATGGA
Seq A exon
GTAAGTGCCCACAGGGGGGGACTGTGTGTGTCCGTCTGTCACCGAAAGTTAAAGCAGACCCAGTTCCATCCAGAGCAATCCTAAGACTGCCAGCCAAGCCTAAGGTGGTTGCTGGAGAGGACAGAGGGCCCCAGAGGGGCAAGGAAACCCCACCAGAGCAGGAGTGTGGTGTGCATGGCAGAATGGGGAGCCTCCAAAGCAGGGACGGTGCACAGGAAGGAGCCCTCTCTAGCCGGTGTCCAGTTGCCACCCAGGACCTGCACTGTCCTAAAAGAAAGACCAGTGGAGCTAGGGATCCTGGGACGGAACGCATCTTGCTGACCACCTGAGAGCCAGTCTCTGGCTGTCTCAGAAAAATGTATCCAAAAAGATTGGAACTTGAGCATTTTTAGAGATTTTTGTTTTCCTTTTTCTGGTTATAGGATATTTGAATGTCCATAAAGCAGTCTTGGATAGGGGACATGGATATAAATATGAAACTTTTATGCACAGCTCTGGGACATAATTTGGTGCATCTTAACTCATTAGCAGGGCGTCCGTGGGGTGTGGAGCCCTCCACATGTAGCATGCTGGAGCTCGAGACGTTTACAGTTTTGGAACAGTTTAGATTTCCAGATTAGGATGTTTGACTTATTCCCTTCCTTGTAGTGGGGTCTTTTGTGGGGTGTGGGGTAGCGCTGTTTGGCTGTTTTGTTTTCTTTTGCTTTGTTCTTGTGCTTTGAATTGATAGAACCCAGTATCTTGTACCCATAGTAAGTGTGTGCACTACACAGTCCAGCCCATTCTACTTTTTCGTTCAGTTATTACTCTAAAAAAGAAAGGGGGATATCGACAATATGGGAGGAGACTCTGAAGAAGCAAAGCCTTCATGCCCCCGACCATCCCTGGCTCTTACTGACCCACAAGGACTTGCTCCCCCTCCCTCTGGGTCCTGTTTGCCCTGGGGGTGAAAAGGGTTGTTGGGATAAGACCTTCAGGGGCCCTGAGATCTCAGCCCACGAGGTTCCAGAGCGCAGGAGACCCATGCCTCTCTTTTCTTCTGCAG
Seq C2 exon
ATCGAAGTGAAACTCTCGGTCAAGTTCACGAGCAGGGAGTTCAGCCTGAAGAGAATGCCCTCCCGCAAACAGACGGGGGTCTTCGGTGTCAAAATCGCTGTGGTCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304:ENSRNOT00000001766:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]