BtaINT0025552 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73698754-73699992:-
Coord C1 exon
chr17:73699933-73699992
Coord A exon
chr17:73698864-73699932
Coord C2 exon
chr17:73698754-73698863
Length
1069 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGT
5' ss Score
7.73
3' ss Seq
GCCCCCTGCCTCCCCTGCAGATC
3' ss Score
11.79
Exon sequences
Seq C1 exon
CTGGACCCTCAGACCCTGCAGGACAGAGACTGGCAGCGGACCGCCATCGCCATGAACGGG
Seq A exon
GTACGTGCCCCCGCGCTGTGCCAGCTCCCGCTTCCTGCAGAGGGCTGGGGTGGTGCCAGTCCTTGCTGAGACCCTCGGGGCTGGAGGAGGCAGAGAAACCACAGCGTGCGGGCCCGAGTCCACGCAGGCCAGAGTCTTGTGGCTGGAGTGCGGGTCACCTGCCAGGCACTGGGCGTCCCTCCTCAAGTGGGGGTTCAGGGGCATCATGGGGATGGAGGGGGCCTGGACCCTGGGGTTTGCCCATAGAGACTGAGACCCCTGACTAGACTCCAGTGCCCCGTAAGAATTGAGACCTTAAGAAAAAGCACCGCCGCTCACCAGAAAAGCTCTGGGCGTGTAGGGCATACCTGGAGGAGGGCGTGGCAACCCACTCCTATATCCTTGCCTGGAGAGCCCCATGGACAGAGGAGCCTGGCGGGCCGCAGTCCCTGGGGTCGCACAGAGTCAGACACGACTGAAGCGAGTTAGCATGCAGGACACAGTGCCAACATTTGATAGGCGATCGGTGGCGTTTTGTTACATTCTCTATACATTTTCTCTAGTGTCTTTTTTTTTGGCTTTTTATTTTGTCTGGGGATGTAGCCAGCCGACAGTTTTGTGATGGTTTCAGGTGAACACAGAAGGGACTCAGCCACACGCATGTGTATGTCCATCTCAGTCCAGTCGCTCAGTCGTGTCCAACTCTCTGTGACCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTGGCTCAAACTCATGTCCATTGAGTCGATGGATACATATATGGATACGTGGATCCATTCTCCGCCAAACTCCCCTCCCATCCAGGCTGCCATGCAACATGGAGTCTCATCGTTCTTTTTAATCAGGATTAAATGAGAAGCAGAAGCCACAGGGTCCTGGGGGGAGGTTGTGCAGAAGCGGGTCCTCAAACGGCCCTAGCTGTTCCCGGCTGCCACTGAGTTGGACCAGGGCCCGCCCCCAACCTGGACCCTAGCCTGCGGGGCCCTGGGAGCTGGCTCTGAGGACCAGAAGGCTGAGAGGGTCGTGCCCCCTGCCTCCCCTGCAG
Seq C2 exon
ATCGAAGTGAAGCTGTCAATCAAGTTCACCAGCAGGGAACTCAGCTTGAAGAGGATGCCTTCCCGAAAACAGACAGGCGTTTTCGGAGTCAGGATCGCCGTGGTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566:ENSBTAT00000029392:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development