HsaINT0017360 @ hg19
Intron Retention
Gene
ENSG00000186716 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:1014]
Coordinates
chr22:23651611-23652620:+
Coord C1 exon
chr22:23651611-23651670
Coord A exon
chr22:23651671-23652510
Coord C2 exon
chr22:23652511-23652620
Length
840 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGT
5' ss Score
7.73
3' ss Seq
GCCCCTTCTCCCTACTGTAGATC
3' ss Score
10.62
Exon sequences
Seq C1 exon
CTGGACCCGCAGGCCCTGCAGGACAGAGACTGGCAGCGCACCGTCATCGCCATGAATGGG
Seq A exon
GTACGTGTCCGTGGGACTCTCCTGGTGCCCACTTCCCCCAGAAGGATAGGGTGGCCTCTGTTCATTTCAAATCAGTCAGAGGTGGCTGAGCCTGAGGCAGCATCTGAGAGGGAGCCTGGTTGGAGAAGGGAGGGCCCCCAAGAGCAGAATCACCATGCACGGGAATCGTCATTCATTGGCTGGAATGCAGTTGCCAGCCAGGCCCTGAGCATCCCTCCTCAAACAAAGGTCTCATGGCACCACCAGGACAGGTGGGGCCTCCACTCAGGGACCTGGGGGCTGCCCATAGAAATGGAGACCCCTGATTTGTCTTTAGGTACCCCAGAAAGGTTTAGACCTTAAAAGCAATGACACACCCAAAAAGGCCCGGGTATAAATGGTAAAATGTTAATATTTGAGATTCTTGGCTTTTTCTTACATTATTCTGTCTTTCCTACTTAATTTTTAATTGTTACTAAGAAAGAGAAAGCCAGGCACAGTGCACCTATAGTCTCAGCTACTCTGGAGTCTGAGGCAGGAGAATCACTGGAACCCAAGAGTTCGATTACAGCCTGGGCAACATTGCAAGCTCCTATATCTAAAAAAAAGCAAGCAAGCAAGAGAAGCAGCGGGGATTTTAGGAGGTGCTTCTGCAGAAACCAGTCGTTTACATCATCTTCAACAATCCTGGCTCTTGCTGAAGTAGACTAGGGGCTTCCCCGAGGGGCGGCTCCACCTCATGCTGAGACCTCTGCATGCCTTGGGGGTGGAAATATTTGATGAGACTCCCAGGGGTCCTTGGGACCTTGGGCTATGAGGACCAGAAGGATTAGAGGACTGTGCCCCTTCTCCCTACTGTAG
Seq C2 exon
ATCGAAGTAAAGCTCTCGGTCAAGTTCAACAGCAGGGAGTTCAGCTTGAAGAGGATGCCGTCCCGAAAACAGACAGGGGTCTTCGGAGTCAAGATTGCTGTGGTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186716-BCR:NM_021574:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(2.0=5.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)