DreINT0037255 @ danRer10
Intron Retention
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17216621-17216877:+
Coord C1 exon
chr21:17216621-17216680
Coord A exon
chr21:17216681-17216767
Coord C2 exon
chr21:17216768-17216877
Length
87 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TATACATCTGTTTTTTGAAGATT
3' ss Score
6.91
Exon sequences
Seq C1 exon
CTGGATCCTCAAATGCTCCAGGGTAAAGACTGGCAGAGAACAGTTATCCCTATGAATGGG
Seq A exon
GTGAGTGTACTGTATTTACATCTATTGCTATTCTGTTATCCTGTCATCCAGCACTTAATTTACTCAATATACATCTGTTTTTTGAAG
Seq C2 exon
ATTGAGGTGAAGATATCTATGAAGTTCACTAGTCGGGAGTTCAGCTTGAAGAGAATGCCCTCTCGGAAACCCATGGGCGTGTTTGGAGTAAATATCTCCACTGTAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286:ENSDART00000101282:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCCTCAAATGCTCCAGG
R:
TTACTCCAAACACGCCCATGG
Band lengths:
151-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]