DreINT0001861 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52414310-52414848:+
Coord C1 exon
chr9:52414310-52414445
Coord A exon
chr9:52414446-52414701
Coord C2 exon
chr9:52414702-52414848
Length
256 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGCCTGTGTTTGTCTCTCAGTTC
3' ss Score
8.61
Exon sequences
Seq C1 exon
GGCTGAAGAAGAAGTGTCTCCAGGATTGCGGCAGTGGCGTAAAGCTCTCAGCGAGGTACGCAGCTCCAGTCAGCTCTCTCTGTGTTTGCAGCAGCTGCACAAGTCCATCGCCTGGGAGAAATCCATCATGAAAGTG
Seq A exon
GTGAGTGATCGACTCGTTTCCACAAGAATTGAGATTTGGGCTTGTTTGTTGGTTATACACACTTATTACACGGCTCCCTGGAATGCTTGATTCTGATTGGTCAGTCATGACATTGAAAAGTATGTTATTCTCTGATAACAGCGGGTACTACAAATTCTGGCCTTTATTGACCTTTATTGTAAAAAAACGAAACAAAAAAGATCAGTTTTATGGATGTTGTTGAGTTGAAGTGATCTGGCCTGTGTTTGTCTCTCAG
Seq C2 exon
TTCTGTCAGATGTGCTGTAAAGGAGACAATGAGGAGCTGCTGCTGCTGTGTGATGAATGTGACAAAGGCTGCCACACGTACTGCCATAAACCCAAGATCAGCACCATACCAGATGGAGACTGGTTCTGCCCGGCCTGCATTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062824=PHD=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAAGAAGAAGTGTCTCCA
R:
CTGTGAAATGCAGGCCGGG
Band lengths:
283-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]