GgaINT0050428 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38195084-38195967:-
Coord C1 exon
chr7:38195832-38195967
Coord A exon
chr7:38195231-38195831
Coord C2 exon
chr7:38195084-38195230
Length
601 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CCATTTTTCATCTATTATAGTAC
3' ss Score
7.6
Exon sequences
Seq C1 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
Seq A exon
GTAAGTGTTTTTAATTAAGAAAAAATAATGTAATTGAACTAGTTTTGCTATATCCTGTTTTCACACTTTACGTATTTTAAGAGAACGTGACTTATAATATATTTTTTATTACTGCCTATAATAATTAATATTAACTGGACATTGTGCACAGATGAGTATAAATATACTGGAAGGGATTGTTCCCTTCTTGTCAAATCCAGTATCATGAAAATTTTAAGATGAAAAGCCCTTGTAATTGTTTGCTCTGTGTAAGATAGTAATTACTCCTTATAATTAACGTTTTGCTAAATAGTAATTTATGGCTTCATCTGCTGAAAGATACTGTACTTAGTGGAGTATTTCTTATCTCATCTGAGACATAAGCTTTATGGTGATTCAGCATCGCATATCCCAATTCAGGACTTCATTTTTGTTCCCACATAGCCTTTAGATTAGTTCCTCACGTACTTTATATATTCCTTATTATTGCTAGACTCTAAGGTAAAATGGAAAAAAAAAAAAAATCCAGAGTGAATTCTTGGAAAGGGAACTGCAATTTAGGTACCTTTCCCATGCTTTAAGGCTTACAAATTGAACTGAGTCCATTTTTCATCTATTATAG
Seq C2 exon
TACTGCCAAATATGTCGAAAGGGAGATAATGAGGAACTGCTGCTGCTTTGTGATGGTTGTGATAAAGGCTGTCATACCTACTGCCACAGACCCAAGATCACTACCATACCAGATGGTGACTGGTTTTGTCCTGCCTGCATAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062824=PHD=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGATATTGCTCCAGGGCT
R:
CTTTGCTATGCAGGCAGGACA
Band lengths:
278-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]