DreINT0001918 @ danRer10
Intron Retention
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30551130-30551379:+
Coord C1 exon
chr8:30551130-30551237
Coord A exon
chr8:30551238-30551327
Coord C2 exon
chr8:30551328-30551379
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GTTTACCGTTTCACCTTCAGAAT
3' ss Score
10.04
Exon sequences
Seq C1 exon
GCCAGCCAGCTTGGCGTGTACAGAGCTTTTGTGGACAACTATAAGATTGCAGTGGAAACGGCTGAAAAGTGTTGCCAAGCCAATTCTCAGTTTGCTGAGATTTCAGAG
Seq A exon
GTCAGTTTTAAGCGCTTGCATTGTGCGCTTGTCAAAACAAGAGCTGGTATCTTGGTAAATTTATGTATTTGTTTACCGTTTCACCTTCAG
Seq C2 exon
AATCTGAAAGTCAAGAGCGCCAAAGACCAGAATGCCAAGCACTCTCTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329:ENSDART00000137009:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.8=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGCGTGTACAGAGCTTT
R:
TTCCAGAGAGTGCTTGGCATT
Band lengths:
151-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]