DreINT0004163 @ danRer10
Intron Retention
Gene
ENSDARG00000080016 | CABZ01032454.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4F9]
Coordinates
chr4:72206750-72211616:-
Coord C1 exon
chr4:72211435-72211616
Coord A exon
chr4:72208367-72211434
Coord C2 exon
chr4:72206750-72208366
Length
3068 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TGGTATTTTTCTCTGTTTAGAGC
3' ss Score
8.42
Exon sequences
Seq C1 exon
TGGATTTCTTTTATTTCTGTTCGTTGTTCTCATTTTTAACAGTGTCCAAACACAGAGGAAAGCTCCTGCTGAAGCGACTGATCTCCACACTGTTATAAAGATGGCGTTTATTAAAGAGGAGAGCGAAGACCTGAAGATTGAAGACACATTCACAGTCAAACAGGAAGATCCCGAACAAACAG
Seq A exon
GTTGGTTTTCTTTCTAAAGATCAACTCACTCATTTCAATTAAAGAGCCCATATTATGGGTTTTTGAAAATTCCCCTCCATGTAGTGTGTAACACAGCTCTAAGTGAAGCGAAGTATCCAGCTAAGGCTTAAATCTGTAAGAATACAGTGTTTAAAACGGTTGATTCATCTATAAAAGAGTCGACTCATAGTGCTTCAAACGAGTCGCCTTGATACCGACTCATTAGGTGTTTCGCCATGACGTACGAACGAAACCAAGTTATTCACGTGCACGCGCAAACCCGGGAGATTTCAAACCTGAGGCCCCGCCCTCTGACGCAGAAACCCAGACACACACCCACAAACACACGCACACCCACAAACACACGCACACAAACATGCCGGTCGATTGAAGTCACACAGCAGATGGATATATTGAGTCTCTACCCAAAGATGAAACATCAGCATTATAACCAAGCAGTTGGAAACTTCTGGAAGCTACATGCTACAAAGAATACTTCATCTGAGTTTGTTAAAGGAAGGATCAGTAAAGAGTAACTGATGGACGTCAGGATGGGTTTCTTCCATTTCTCAAGTGTAAGTACGTGCGGTTAAAGTTGTTGCCTCGTTTACTCTTGCTTGCAAATGTATTTAGTTGTGATTTGTTACTTGTAACCGCGTGTACTGTATCAGGTTAACTGGATATATTATCTTATCGCGTGCAAAGTCACGTTAAAAACGCGACGCGTGCTGTTTGTTTATGGAGCTCCGTGCTAGAGTTCTGCTCCCGCGATTTATTCGGAAATTTATTCCCGCGCCGCAGAAATCTGGCGCGGGGACAGCCGCGGGAATAAATTTCCGAATAAATCGCGGGAGCGGTCGGTAACGGGTTTAATTTGGGACGGGAGCGGGCTGTCTAGCAATATCACGGATATTGCTATGCGAATTAGAAAGAGAGAGTCTGCGTGGTGCTTGTGTGTGTGTTAGTGCGCACGCGCGCGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAACGAACGAACGAACGAACGACAGCTTGGCTGTCTGGACTGTATACTGGGTGATTTTTGGTTGTGTTCTCCGCTCTAGCGGGACCGGGCGCGGCGGGCAGAAAACGGAGCGCGTTCTCAGGCTAAAACCTGGCGGGTGCGGGCGGAAGCGGGAGCGTTGTCATCCGGAGGTGTGTGTGTGTTTTTGTGTGTGTGTGGTATGGCGAGTACACGACTGTCTCCTTCGTTCGGTTATCCGTGGCACTATCCACTCGCCATAGTGTGGCAGCTAAAATTCACGTCTATACTATCGAGCGTGTATGAACTGTGATTACTTTTTAAATTGCTGATTAGCTATTGGCCATTTCCCTCTCTGACTGAAGGCAGTCGACCAATCGCGACAGACTGTCATCGGTCCAATCAGCGCAGATTAGCTCCGTGCTAAGGAGGGGTTTGGGAACAAATGAATCACTGGACGATTCATACAGGAGTCGCTGGGATAATTAGGTAAAAATAAATGCAGATTATAAGACCATGAAAGTGTTTTTTGACCTTGCATGCATATTAGACTGTTGTTGGAGACCCTTACAACCAGGATATGACCCTATTTCATGTATAATATGGGCTCTTTAATGTCTGCTGATACAATTAGATTTAGCATAAATATTGAATCAAAAGCTTATGAATAATTTCCCCAACAGTTATACATCTCAACTTGCTGAGGCAAGTTTACTGTGTAGTCTGAAGACGATTATTATTAGCCAATCTCCTTAGCTATTTACATAATTCTGATCAGTATATGTTCATAGTGCACCTTCTTTAATGTAGTATTATTATTATTATTATTTCAAGAATCAGGTTCACTTCTACAGTGTGGGAATAGGCTAACATTACTACCGAAAAGGCTAATCATTATTATGACAAGAAGTTATTTTAAAGAGCCCATATTATACATGAAATAGGGTCATATCTTGGTTGTAAGGGTCTCCAACAACAGTCTAATATGCATGCAAGGTCAAAAAACACTTTCATGGTCTTATAATCTGCATTTATTTTTACCTAATTATCCCAGCGACTCCTGTATGAATCGTCCAGTGATTCATTTGTTCCCAAACCCCTCCTTAGCGCGAAGCTAATCTGCGCTGATTGAACCGATGACAGTCTGTTGCGATTGGTCGACTGCCTTCAGTCAGAGAGTGAAATGCACACAAACAGAAAATGCGCACACACACACAAACACACACACACCTCTGGACGACAACCCTCCCGCTTCTGCCCGCACCTGCCAGTTTTTAGCCTGAACCCGACAGCTCCAGCTTATATTAAGAATTTGTTGTGCCGGTGCCCGACCCGCCCCTTTTTCTGCCCGCCGCGCCCGATCCCGCTAAAGAGCGGGGGAGAACATAACCGAAAATCACCCAGATATACAGTCCAGACAGCCTAAAACAAGCTGTCTGTATAAACACACACACAAGCACCAAGCAGACACACAGGCAAAGCTTTCTCTCTCTTTCATTCGTATAGCAATATCCGCGATATTGCTAGACAGCCCGCTCCCTTCCCAAATTAAACCCGTTACCGACCGCTCCCGTGATTTATTTGGAAATTTATTCCCGCGCCGCAGAAATCTGGTCGGGTCCCGCGGCGGGAATGCAGACCTCCAGAAATCTGCGGAATTCTGCGTGCGCAGATTCTGTGTGGGCCTACCCATTATCCAAAGATCTAGTGGATTACTTTTGAAAAGCTATACCAGGGGTCACCAATCTCGTTCCTGGAGGTCCGATGCCCTGCAGGGTTTAGCTCCAACTTGCCTCAACACACCTGCCTGAGTGTTTAAGTATACCTAGTAAAACCTTGAATAGCTTGTTCAGGTGTGTTTGATTAGGGTTGGAGTGAAAATCTGCAGGACACCGGCCCTCCAGGAACAAGTTTGGTGACCACTGTGGTAAAGGGTTTAATAACTATCCACTTTTAAGTGTCCTGAAGTCAGCAAAGAGTTTAATATATCAAGACTTTAATATAAGGTCTGCTTTGCGCCTTTGAACGAGGGTTAATTGGTATTTTTCTCTGTTTAG
Seq C2 exon
AGCTGATGGTGCTGAAAGAAGAGACTCAAGAGATGAATGAAATGAAGGAGAAAGATCAGATCGAGACGCACCAAGATTTAACGACTGATGAACAATCATCATGTAAGAGATCTCCGAAAACCAAATCTGATTTCATTTGCAGTCAATGTGGAAAAGGTTTTAATCATCAACCAAACCTCATCGTTCACATGAGAATTCACACCGGAGAGAGGCCTTACTCATGCGATCAGTGTGGAAAGAGTTTCAGTCAGAACGAAAAACTCAAAGTGCACATGAGAGTTCACACCAAAGAGAGGCCCTACACGTGTCCTCAGTGTGGGAAGAGTTTCACTCAAAAAGAAAGCCTTAATGTACATATTAGAGTTCACACCGGGGAGAAGCCGTTTCCCTGTCAGCATTGTGGAAAGAGATTCAGTCAACTGCATGCTCTTAAAGAGCATGTTACAATTCACACTGGAGAAAGGCCTCATGCCTGTACTGTGTGTGGGAAGACTTTCTATCACAAGCAGAAACTTGAAAAGCACATGACGGTTCACACCGGTGAGAAGCTTTTCGACTGCCAACAGTGTGGAAAGAGGTTTGGTCAAAAGGACAGCCTGAGGATCCACATGAAACTTCACACTAAAGACAAACCACACGCTAAAGAGAAGCCTTACATCTGCACAGAGTGCGATAAAGCCTTCGCAAGTAAAAGCAATCTTAATCATCACATGGTCACTCACACTGGAGAGAAGCCTTTCTCGTGTGATGAGTGTGGAAAGAGTTTCGGTCAAAATTCGAAACTTAAAGTCCACATGAGAGTTCACACCAAAGAGAAGCCTTACTCATGCGATCAGTGTGGAAAGAGCTTCAGTCAGAATGAAAAACTCAAGGTCCACATGAGAGTTCACACCAAAGAGAGGCCCTACACGTGTCCTCAGTGTGGGAAGAGTTTCACTCAAAAGGAAAACCTCAAAGTACACATCAGAGTTCACACCGGAGAGAAGCCTTTCCCTTGCCAAGAGTGTGGGAAAAGATTCATGCAATTGCATGTCCTTAAAGAGCATCTTAGAACTCACACTGGAGAAAAGCCTTTCGCCTGCCCTCAGTGTAGCAAGACTTACTGCCAAAAACAGAAACTCAAAATGCACATGACAGTTCATGCTAAAGAGAAGCTTTTCCCCTGCCAACAGTGCGGAAAGAGGTTTGGTTATAGGGGCAGCCTGAAAAGCCACATGAAACTTCACGCCGAAGACAAACGTCACACTTGCTCTCAATGTGGTGAGGGTTTTACTATGAAAAGTCATCTTAATTCTCACATGAGAACTCACTCTGGAGAGCCGTCCTACAGCTGCACACAGTGCGGTAAAACCTTCTCACGTAAATACGTTCTTAATTGCCACATGAGAACTCACACTGGAGAGAAGTCATGTTCGTAAGGTCAGTCTCACGGTCATCCAACCTTAACCTCAACCTTGGCGGTGTGTGTTTTTCTGAATAACACAGTTGAGAACTAGGTTAGCAAGTGTACTGTGATGTTAGTAACTGTACTATGGACCAGGTTGTGGCCGGTCGATACTATTGGATACTTTACCAAAGTTGGCAACCTGCAGGTGTTACAGACTGTACCAAAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080016:ENSDART00000129778:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF132401=zinc_ribbon_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.9),PF0403211=Rpr2=WD(100=11.2),PF0013017=C1_1=WD(100=14.0),PF134651=zf-H2C2_2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]