DreINT0007145 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62717617-62719234:-
Coord C1 exon
chr5:62719026-62719234
Coord A exon
chr5:62717775-62719025
Coord C2 exon
chr5:62717617-62717774
Length
1251 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
ATGCATTGCTGTGGTTTCAGGTG
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTGCGTGTGGAACTGCAGTGTGTGCAGCAGGAGCTTCAGGAGCAGCGTGAAGAGGCTGAGAGACAGATGGAGAAAGACAGAGTAGAGCTGCACTCGCTCCAGCAGAAGAGCCTCCACCTGCAACAGCAAACAGAGGCAGCAGTTCAAGAGAGGAGCAGCCTGCAGGAACAGTGCCGAAACCTGGAGGCCAGACGCACACATGCTCAGAG
Seq A exon
GTACTGAAGGGAAACAATTCAATTCTTTTTCATTAAAGCTGTGCAAGTTAAAATATATATTGTATGGATAAAATTAAAAAGTCTATCTTTCAATATTATGCTTTTCGTTTACTTCGTGGTGTCACAAAATAAGTATGAACCGCACTTAGCAATGAAAATGAAACCGGAAGCGTGCACATCATTTAATAAGAGTGATTTCCGTGACCGAGCTTTTCTCACTCCTCAGCTGTAATTTAGATCATTTCTACTTGCAATTATTGCTATGCCACCTCTTGCATGAAGTGTTATATGTTCTCAGGGCTTACCTGTACTCTTCTTTGCCCAAAGATCACATCCCCAGCCAGGGGGTTGTAGCGCTCACCAGCGCTCCTCCACAGAGTGCAGCAGGCTGCCTTTGTGCCTAATAAAATGGCCTTATTTTGCACACACCCCTGGTGTATTGTCTGTCCATTCATCTCACAAGTCACATCAGTCTTTTCTGATCCTTCCTTTAACAAACGAATGAATCGCCCACTGCGTGTAGACTACTGAATCACTTCTTTCCCCTCACAAATCCAATAATATCCAGGTAAGCACAGCGTATTCATGACTCATGATGACTTTAGGATCTGTTTTTGCAGCTGTGTTAGCAACAGTTATGTTTCGTTGTTACGTCACGTCACACTCGATACAAAGACGATTCATTCTAACCACTATGAGTCGATTCCTTTTTTAGATGAATCAATAGTTTTAAAAACTGCACTTTCAGATTTAAGCTTTAGCTGGATATTTCACTTCACTTAGATCTGTGTAACACATGGAAGCTCATTTTCGAAAACCCACAATAGGGGCTCTTTAAATAAAATAAACTTTTATCCTAATACGTTCTGGCCTTAACGCTATATTTCCTTTAGTCCAGATACTTCAGTTCAAACATGTGCTGCTTATTTACCACACATCCACTTAATACATTACATTAAACATGTACACATGAACATCACCTTTGTGCTATGTAACTGCATGTTAACTATGTTTATATATACTAATTATACCTGTTAAAAGCTATTATTAGTCACTAGGTAAAGTTATTTGTAACTTATAAAGCTATGGTAGTTAACAACCTTAACTTTCCGAATTTGTAATGCAATGATGTGCACCTTTTGTAAAGCTGCTCTGAAACAATACTTATTAAATTCAATAAAATAAATCTTGTACTGTAGACTTGCTGTTTCATTCTTATGGTTTAGCTGCTATGCATTGCTGTGGTTTCAG
Seq C2 exon
GTGTTTGGAAGCAGCAGAGACGAGGACGAGTGAAGCAGAAACTGAGCTTCTTAGAGTGCAGGCAGAGCTGAACAAACTACAGCAGGAGCTAAAACAAACACAAGACCTGCATCTGGAGATCAGCAGAGACAATGTTGCCGTGCAAAAGCGGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGAACTGCAGTGTGT
R:
TTGCACGGCAACATTGTCTCT
Band lengths:
351-1602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]