MmuINT0034557 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35021168-35023408:+
Coord C1 exon
chr2:35021168-35021385
Coord A exon
chr2:35021386-35023250
Coord C2 exon
chr2:35023251-35023408
Length
1865 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCACTTTATTCTGTGGTAGAGT
3' ss Score
5.66
Exon sequences
Seq C1 exon
GAGAAACTAGAGCTGGAGAATTTGCAGCAGGCAACGCAGCAGCAGAGAAGGGAGCTAGAGCGGCAGAGACAGCTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCAGAGAGCCAGGCCCTGCAGTCCTGCGTCGAATGTCTGAGTAAAGAAAAGGAGGATCTCCAAGGACAGTGCGAGAGCTGGGAAAAGAAGTCTTCCCACGCCCAAAG
Seq A exon
GTAAGGGCAAGGATAGAGACATGGGGGCAACCATGAGAACAGAGAGATGCTCATGGGGGTGCATTCTGTAATCCCAGCACCCACCAAGTGGAGGCAGGAGTGTTGCTGTGGATTTGAGACCACCATGGCCTACACAGTAGGCTGCAAGCCATAGTGCCACTTAGTCAGAACCTATCTCAAGACAACAGCAGAAGCCACATGCGGTGGTGCACACCTTTAACCCCAGCACTCAGGAAGCGGAAGCGTCAGATCTCCGAGTTCAAGGCCTATGGAGCGAGTTCCAGGATAAGTCAGGGCTACACAGAAAAACCATCTTAAACAAACAACAAAAGAGCAAAGATTTAAAAAAAAAAACAAAACAACAGAAACCCAGAAAAACCAGAGTTCACTCTCTAGGTCTCCATGTTAAAGCAGAAATAGTAGACACGGTGACAGATGCTGTAATCCAGCAATGGGGATTACATAGAGACAACTGCATCTCTGGGCACTAGCCTACCCTCCATGAGCTGCAGGCCAGTGAGACCCTGACTCTAAAGGGAAAAGAAGAGCAGCTCTTAGACCCCCAAGTTTGTCCTCCAGGACACACAGTCTTTTGCTGGAAATAAGTAGAAAGGAAGATTTTGTTCACTGCTCTAAGAAGACAGATTGTTCTCAGATTGATCTTGTCTTAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGTTTACACTTCCACATTGCTGTTCATCACCAAGGAAGTCAGGGTGGAGGTAAGTGGACCCAACTGGCCAGCCAGTTTAGCCAACAGAGTGAGTTCCAGGTTCAGTGAGAGAGCATCTGTTTCACACGTGCCTGTACAGGTAAGCACACCTTACATGCGTGTGCTCACACAGGCACATAAAATTAAACAAATAAAACAAGACATTTAAAGCTAAATGTCTTGTTTTATTTGTTTAATTTTATGGACAGTGGAGGTGAGGATTCAAAGCCTGGCAATGCTGATGTCCATAGGTCATTCCCTGGAACCTAATAAGGAGGACAGATGCTCTGGGTATGCATCTGAGATCCCAGCACTCTTGTGGCAAGACAGGAAGCGGGGATAGAAAATCACCTGGAAGCCACATGCCAGCTGGCCTGGAGAACATAGCAGAGCAGAAACACGAGTCAGGGCAAAGAACCAGCTCCCAGAGCCTGTCCTCTGCCCTGTGCTCACATGAATGCACAGTGATAAGAAACACGTGATCGTACTAGGAACTACACAGGTGTGGTGGCACTCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCGAGGCTGGCCTAGTCTACTACATAGTTCTAGGATAGCCAGGGATATGTAGAAAGACCCTCTCTCAAAAAGCCAAAAATAAAATAAAATTAAAAACAAAAACTGGACATTTAAAGGATCACTCTAAAATATAATATTAAAACTAAAGAAAAATACATGACAACAGTTAGGAGAAAAGAGTTTGAACCTGGTATGTAACATAGGACTTAGGGCCACAAACGTCTGGTGTAAAAAGTCTTCCAAACTTGATAAGAAATAACCTGTTTTCTTAAATGGGAAAAACATTTGAACTTATATTTTTATAGAAGATATATAATGGAAAATAAGCATGAGGGAAATCCAGGTTAAAACCACAGTTGATAATGTGCCTGCTAGAATGGCTGATACCCGAAGACCCATTGTACATGTAGTTCTGGCGTCTTCCATCTCCAGCCTTACCCTCACCCCGGTGACGTCCACTGTCTGTGCACTGTGGAAGGCAGGGCTGCCCTCATCCACGTTAGTGTGGGTGTTTTCTGTCTAACAGTCCACTTTATTCTGTGGTAG
Seq C2 exon
AGTTCTAGCAGCCACAGAAGAAAGCAACAAAATGGAGCAGTCCAACCTTGGGAAGTTGGAACTGAGTGTCAGAAAGCTGCGGCAGGAGCTGGAGCAGCTGAGCCAAGACAAGCTTGCCCTACACAGTGAGGTAGCCGAGGTGCAGCAGCAGCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAATTTGCAGCAGGC
R:
TCGGCTACCTCACTGTGTAGG
Band lengths:
344-2209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: