GgaINT0126682 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8369489-8370256:+
Coord C1 exon
chr17:8369489-8369706
Coord A exon
chr17:8369707-8370098
Coord C2 exon
chr17:8370099-8370256
Length
392 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TATGCATTCACATTTTACAGAGA
3' ss Score
6.79
Exon sequences
Seq C1 exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
Seq A exon
GTGGGAGCGGGATACATTCTCTGCAAACGTGATAAGTGGTGGGAAGTGTCTTGAATTATAGCTTATTGTAATTAAAAACACAGCTGTAACTCTGATACTATAGAATGTCATTTCTTACTCTCTGTGGAGGCTTTAATTTAAGCATGTCTACAGTTTGTGTATAGTAGAATTAGAGAAAATATGCACCACTGAATGCAGCGGTGTTTCTCATGGCGATGCAGTGAGAAATGTTATGAAAAGCAAAATGTTCAGCCTTGGAACGAGACAGCTGTTGTGTTCTTCTGGCTGTTGGGTGGCATCCCCCTGAGCTGAAAACAAACTGCTGAAGTGCAGCCACTTTGAGTGCACCATGGACCTCCAACAAACCACCACTATGCATTCACATTTTACAG
Seq C2 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF127182=Tropomyosin_1=PU(45.3=65.8)
A:
NA
C2:
PF127182=Tropomyosin_1=FE(50.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGTCAGCAAGGGGAAGT
R:
CTTGAAGATCTTTTTGTACAACAGTG
Band lengths:
342-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]