GgaINT0126682 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9074145-9074912:+
Coord C1 exon
chr17:9074145-9074362
Coord A exon
chr17:9074363-9074754
Coord C2 exon
chr17:9074755-9074912
Length
392 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TATGCATTCACATTTTACAGAGA
3' ss Score
6.79
Exon sequences
Seq C1 exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
Seq A exon
GTGGGAGCGGGATACATTCTCTGCAAACGTGATAAGTGGTGGGAAGTGTCTTGAATTATAGCTTATTGTAATTAAAAACACAGCTGTAACTCTGATACTATAGAATGTCATTTCTTACTCTCTGTGGAGGCTTTAATTTAAGCATGTCTACAGTTTGTGTATAGTAGAATTAGAGAAAATATGCACCACTGAATGCAGCGGTGTTTCTCATGGCGATGCAGTGAGAAATGTTATGAAAAGCAAAATGTTCAGCCTTGGAACGAGACAGCTGTTGTGTTCTTCTGGCTGTTGGGTGGCATCCCCCTGAGCTGAAAACAAACTGCTGAAGTGCAGCCACTTTGAGTGCACCATGGACCTCCAACAAACCACCACTATGCATTCACATTTTACAG
Seq C2 exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGTCAGCAAGGGGAAGT
R:
CTTGAAGATCTTTTTGTACAACAGTG
Band lengths:
342-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]