DreINT0008195 @ danRer10
Intron Retention
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44653491-44658215:-
Coord C1 exon
chr19:44658030-44658215
Coord A exon
chr19:44653665-44658029
Coord C2 exon
chr19:44653491-44653664
Length
4365 bp
Sequences
Splice sites
5' ss Seq
TCGGTACGT
5' ss Score
10.06
3' ss Seq
ATGAGTGTCTATCTCTATAGTGG
3' ss Score
5.21
Exon sequences
Seq C1 exon
TTGTCAATTGCTCTGACCCTGGGATTCCCGCCAACTCTATCAGGCAGAGTAAGATCGAGCATGGAAACTTCACCTTTGGCACGGTGGTTTTCTACGACTGCAACCCCGGTTATTACCTGTTTGGCTCACCTGTCCTCACCTGCCAGCCCACGGGTCAATGGGACAAACCTCTGCCAGAGTGTATCG
Seq A exon
GTACGTCCCTGGCACCTCTCAATAAAGATTTGGCAGTGGCATCATGCTGTTGATTACCTTTTCACTGGCGTAACAGAGCGGAATTAGTATCACAACCTTTTTCCTGCTGTTTAAGATCAGTGATTATAATTGAGGGACAGGTGGAACACAGATTTTCCTTTTGTGTGTGTGTGTGTGTGTTACAGATTAATTAGCAATGCTTTTGTTAGCCCCTGTGTGCTGTTGAGGATGTTTTCATCCACTCTAGGATGATTTTGAGTCTTAATTTGGCAACTAGTTTCTCTGTGTTTCAGCAAAGGGGAAAGATTTTCATTGACAAACCTTATTTTGACAAACATTTTGGGAAAATACTTCAAAAACTCAACCCCACGCTGTACATTTATTTTAGTTTTGTTATGTTGGTGGCTGTATTTGCCCCATTGACTTCCATTATAGTGACATTTTTATTCCAAAGCCATGACAGCATTAATTTTTTATTTGATGCAGACACAAACAATTCGGTATCGTTTCAGTAACAGATCATTACCGGTTAATACATACTGACGTCATTTATGTTAAGTCACCTCACGAAAACGGAAATGCTTGAAGTTTCTGCCAACCCGACTCTACATCATAACTTTTCAATCCAGATGGATGGGGCAACCATTACTGCATCTAAAACGGTGAAAAGCCTTGGAGTAACGATTGATGACAAACTAAACTTCTCTGACCACATTTCTAGAACTGCTCGATCGAGTAGATTCGCACTGTATAACATCAGAAAGGTCCGACCCTTCCTATCTGAACATGCAGCTCAACTCCTTGTTCAAGCTCTTGTTCTCTCCAGACTGAACTATTGAAACTCTCTACTAGCCGGGCCTCCAGCTAACTCTATCAAACCTCTTCAGATACTTCAGAACGCAGCTTCAGAAAGAGCACATATCACTTTGCTGCTCATCCGTTTGCACTGGCTGCCAGTTGCTGCTCGCATCAAATTCAAAGCTTTGATGTTTGCTTACAAAGCGACTTCTTGTGTTCTGTGAATGAACGTCGCCTCGTGGTTCCATCCCAAAGAGGGAAGAAATCACTTTCCCGAACTCTCGCATTCAATCTGCCCAGTTGGTGGAATGAACTCCCTAACTGCATCAGAACTGCAGAGTCACTCGCTATCTTCAAGAAACGACTAAAAACTCCACTATTTAGTCTCCACTTTCCTTCCTAATCTGCAATTGCCTCTCTGGCTCCACCGCTAACTGTACTACAAAAAAAATAATAAAATAAATTAGAAAAAAATTACTAATGTTTTGCTTCTTACACTTTACATACCTGAAACTTGCTTACAGCACTTATTCATTGTTGCTCTTATAGTTGTGTAAATTGCTTTCTTGTCCTCATTTTTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAATGTAAATATGCACTATGTTGCGGTAAAATTCTATAGCAAAGGAGGCAATGGCAAGGTAAATGCTCCAACTACTTCAGAAGACAACTTGTGAGTTTGCTGGTCAGCCTTTCAGTTACACTGATAGTACAGCAGGACCCAGAATCTCCTATTTGTTTTCTATTTTGTCTATCACGGATGACAGTCGAACATTATGCCCAAAGACTGTAACCACGTCACCCATCGGTGTTCATTGCTGACAGTTTTAGAGCCAGTCCCAGCCAGGTGTGTCGCTAGACTCCATTTACTGGGGCACGATTTACTTTATGCAAGTATTAAGAGTGGTAATCCCAGAATAAAGACGTTATTCTCTCTGTGCAACCAAACCAACGCTGATGAAAGCAATGCAGTTTAATCAAAAGGCAAACTGAGCATGTGCGCAGAAAAAAACATACCCGCACGCTTCACACACCGCTCCTGCTTAAAGGTCCGATTGTGAACATGCATGCTGAAAAAAAATAGCCGGGCCGCTCATGCATTGTGAAACCGGCTTTACCGGCACCCAGTCAGTTTTGCAAGTCAACAAAACAACATTTAAATAATATAACGGTGATCTTATTTATTTATACTGCATGGCTCCTGATAGATTTTTTTGGTATGAAGATGAAAGGTGGGATGAAGTCAGGGAGGTCAGACTTAATAAACCTAATTCTTGGCCTTGATTCGGGTCTAAGACAACACAACAGATTATTCAGCCTTGGATAATTCTATAAAACCTTTTTTTATAATCTTCTATTGAATTGTCTAAAGAATTTCATTTTAATAAAATTTATATTTATGCTAAAGTTTTCTTAAATTATCAATTATCTTAGCATCAGTCCAGATTGTTTTCCAGTTACATTTAGGATTAATTTCTGTTATTTAGAATAATAATTGTATAATAACAATAGTACTGCTATTTATTTATAATTGTGCTTTTTTTGTCTTAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACAGCTCTTTCTGTTGAATACGTGAACACAATAACCAATCATAGGCGTTTATTTATTTATTTATTTTTATTTTTTTATTTTTTTCCTGGTTCTGCAGGTTGCAATGTCCCGAATTTTGATTGCCAATCTTAAGCCAATGGTAATGGTTTTGGTTCAATTTGGAATTTCCCCAACCAAGGGGAAACCAAAAGGGGGACCAGAGTGAGTGCTCTAACTTGCCACCCTTCAGAGAAATGGCCTGATGGGATGATAGCGGGATAGAACTGTAAAATACGGCAGAATCTCGGGAAAAACGTGACGGTTGACAGGTGTGATAAAAGCCAGAAACATTTTTTGCCCAGGCCTATTTAAAGAGCTAATGCTGCCAACGTATGATCACCAGTAAAAATTACAAATTGTACCTCTTCCCAACAGGAAAAACCACCAAAAATCAAGAGTGCATGATTAAATGCTGTCATGGCTTCGCAATCAATAAATGTGATTATAATAAAAGTCAATGAGTCAAAAACAGCACCAGCATAACAAAAAAGGTAGTACATTTGAACAATACACAAGGGTTAAATCAGATTTAGTGAAAGTTGAAGCAGCAGGTCTCGCGCTTGGTTAGGCTTGTTCTGCAGCAGCTGCGATGTCGACGGGACCTGCGCTTACATTTTGCCCTGACAAGACTCCCTGCTGTCTGAGATGCCCTTTCGCCCAGTCGCCCGCTTCTGCTTTGTGTGTCTCCATAATCTTCCCTGTAGTTTTACACGTGTGATCTGCACACCAGTTGCTGGGCTCTGAATACCTGAGTGACTCTACTGTAAGAGCTGGGATATGCTCTCTGCATAACAACACGCTGATGATCGCTGTTTCTTTGCTGGATTTTAGCACAGTTTAGCAAATGATTTATTCATGTTTGTTTACAGTATGTGTGTGACACCTCACAAAAACGGAAATGCTTGAAGTTTCTGCCAACCTGACTCTAAATCATAACTTTTCAAACCAGATGGATGGGGCAAACATTACTGCATCCAAAACGGTGAAAAGCCTTGGAGTAACGATTGATGACCAACTAAACTTCTCTGACCACATTTCTAGAACTGCTCGATCTTGCAGATTCGCACTCTACAACATCAGAAATGTCCGACCCTTTCTATCTGAACATGCAGCTCAACTACTTGTTCAAGCTCTTGTTCTCTCCAGACTGGACTATTGAAACTCTCTACTAGCCTGGCTTCCAGCTAACTCTATCAAACCTCTTCAGATGCTCCAGAACGCAGCAGCACGGGTGGTCTTTAATGAACCTAAAAGAGCACATGTCACTCCGCTGCTCATCCGTTTGCACTGGCTGCCAGTTGCTTCACTGTTTCTTTGCTGGATTTTAGCACAGTTTAGCAAATGATTTATTCATGTTTGTTTACAAAATGTGTGTGAACACCTTTTCTGCAGACATGTGAATGCATATGCAGTTGAAAGGAAAAAATATGAGCCCCCCTGTTACATTTTTTAAATATTTTGCACGTGATTTTTAACGGAGCATGGAAAATTTCAAAGTATTTGCTATAATATTTATTTTTAGATGCAATCAATGACAATATTTGAAACTTTTGGCAGAAATGTTATCAGAGACTTTTTAAGTGCTCTCTTTTGTTTTTGTTTTTTTATGAATAGTGCTCAATGCATTGATATTTAACAAATAATAAAAGAAAATCAACATCATTTTAATGGCTACTCTGGCCAGGCGTTGAGAGCTGAGCAACAGGAAAGACAGAAAGTTTATGAAAGTGCTGATGGTTGCTCTCCTGCGGGAAGCTGAATTAGCACTGTATTCACAGAGATCAACTGCAGTGGATGGATAATTAAAAGTAAAGAGTAGCTTATGTTTCAGATGTTTTAATATCGTGAATGTGCGCTGAATGAGTGTCTATCTCTATAG
Seq C2 exon
TGGTGGACTGTGGGCATCCTGGATCTCCTCCTAATGGGCTGCTGAGCGGGGATAAATTCACCTTCGGAGCCACGGTGCGATACAGCTGTACGGGTGGCCGGCAACTGAAGGGCGAATCCTCCAGGACGTGCCAGCTCAACGGCCACTGGAGCGCACCCATGCCCTTTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920:ENSDART00000108507:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]