Special

DreINT0008422 @ danRer10

Intron Retention

Gene
ENSDARG00000021392 | CU459160.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7EYV5]
Coordinates
chr14:41139928-41143728:+
Coord C1 exon
chr14:41139928-41140037
Coord A exon
chr14:41140038-41142758
Coord C2 exon
chr14:41142759-41143728
Length
2721 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
AGTGTGTTTGTCATTTTTAGTGC
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTATGGAATGATTATCGGTTGATGTGGGATCCAGAGGAGTATGAAGGGATGAGGAAAGTTCGGCTTCCCTCTCAACATATATGGCTGCCTGACATCGTCCTGTACAACAA
Seq A exon
GTAAGACATTACTGTATATAGCTCTTAAAAGTCTACATGAAGTAAAAAAAACAACTAACCTTTAATCAAAATCTGACCTGCTTCTGCTCAAAATATTTTAAGAGTTCACACTTAGCTGATGATTGATAATAAAGCTTGTTCGGCATGCTGTCCCGGGAGAGAGCCCTGAACTCATAAGATCCTAAAGCCTGGGGCTCCCTCCCGTTTGAAGGGCGAGAGGAGAGTTTGAGCTCAGGTAGGTCTTGAGAACTCCCTTGCTTATGAATGTTATATCTGGCTTAGAGTTGTCCCAAGATGCTATTTTGGAGTAGTCATTTTACTTATAGTGTATGTCTTTGGATGGAGGGAGGAAATCGAGTTAAAAAAAAAAAGAGTTCAATCTAATTTCAATTTAAAGCGACAGTCACCAAGATAATTTTCTTGTGTATTTTGAGCTGCAACTTCACAAACATGCTCTAGGGACATCAGAGACATACGTATTGTAAAAATAGGCATGATAGGTCCTCTTTAAGACTAACAATGTGCGCTAGTAAAATAAAAATTGTACATTTTCATTTCATGCAGACTTTGGGAATACCCTTATGATGCATTATTAAAACAGGCTTCTTAGGTCTTAGACCTTCATTTCCTCACACTCATATCATTCTAATGCAACTTTTGTCTGCTGGGAAAAAAGTTGGAATTTTAAAAGTTTGATTCAACTTGTTTATTAATTCAAGGGGGTTCAAAACCCACACTGGACCTCACTGATTTTCAGTGTATGGGGAACAAATTGATTTTGAAAATTTCATCTAGTTTGTGCTGCAGAAGAAAAAGTCAAACCGGTTTGGAGTGACATGAGGGTGTGTAAGTGATGACAGATGCTTCATTTTTGCTGAACTATCCCTTTAAATAATTTATTAGAGGTATTAGTAATGCAAAGGTTGAATCTTTATAAAAAATACAGGTGGCAGCAGGAGACCTTGTGTTATGATTTTTTTTACATTGCTGCATTGATGCAGAATTTGGGCAAAGTTTAAACTTTTCCAAGGACAGAGTTACTACATTAATCTTAAGGATTGAGATCCGACTGACACTGTTTTGTTCACATGATGATGAATAGGGCTGGGCGGTGTTTTGAGTTTTTACAATATATCTATATATATTTTTATGAACTATATGGTAGGGTTGTCACAATATTGGAATTTGGTACTAATCGATAGTAAAATTTAAAAAATGTCTTGTTTATTTATTTATTTATTTTGCTTGTAATTTATTATAAATTATGCAGATGCACTATAAAAAAAAGACTTGATCACAACAGTGGATTTAAAAAGCTCCTATTTTACCCCTTTTTTCAAGATTTAAGAAAAGTCTTGTGTTTCTCCAGAATGTGTTTGTAAAGTTTCAGCTCAAAACACCCGTAAGACTATTTATTATACTTTTCATAACATTAGAATTTTCTTCTCTGAAAATAGTGTAGCTGTTTTTGTGGCCTGTACCTTTAGTGCTAGTTCTCCCCGTCCACCGTTCCCATGTGGCTGTTAAAGTGTGCCTCAGCTCAGTCTCCGCTTTAGCTGCGACAGACATGAAGAAAGCAGATAACGTTTGTGAGAAATACTACAGTAAGAACTTTCCCAATGATTATTTGATGTATTTGTTGTGGAGTTAATTCAAGCCTTTCTGCGACATGCAATGTCATTACAAAGTTCATGCACACACACAGACACACACACGCAGCGAACATACATACATACAGCGCACACATTTAACTTTGCATTGTTTTTGCATGCAAATGTGACAGAATACACATTAATATGCACTGCTGTATGGATATCCTCTATGTTAATGTACAATATAAACCTGATTTAATGTCCACAAACCAGGATTGATGCATCTTTTATAATTGTTCTGACGTGCAGCTGAGGTGATTCAGAAAAGACAGCTCTAAAAAAATCGCAGTAATTAATTACAAACATGCACTGTTTTAAAGATGTTTTAAACTTGTAAAACTCTTCTTGATCTTGAATTCTTGATCACATTTAATGATGATTGATGATCACAAGGAGTTGAACAGAATTTTAATCCCTATTGCTTTGCGCACATCCTGTTTTGTTGATATGATTATACACGTTACTACGACAACATGTTAATAAGCGGCTGTCAGTCAATTCGGTGGGAGGAGAAACCGCACTCCGTCACGTTGAGCCTCAAAATGGGAGAGATTTGGATCCTATTTTAACTTCAGGAAATAAATAAAGAGACTCATTGGGGTTTTATCACCCCCAATATGACTGTGGACACACTATACCTACACACATCTTTCAAAAGATGATTTTCAGTATAGGTGCCCTTTAAATGAATGAAATCTTTCCAAATCTATTCAAATGATCTGGTGAAATTGTATTTATATCGCAATATATCGATGCAAAACTAAATATGGCAATGTCAGATTTTTCCAATGTATTGCAGCCCTAATTGTACAGCATGAAGTAGGATATAACAAGTGCAAAACAAATACAGATTATTTAAAGTACAAATGTAAAAATAAAGAAAATACTGACATATCCATCTAAAAAATACCGAAATGTGATTTCTCGCCCAGCCCATAATGATAAGCTGACTCTCTGAAACTTTGAGTTTCACCTTTATTTTTATGCACACCAGCAAAATAAGATACTCACCTTTTTTGTTTTTTCACTTAAAACAACATATTGAAAGCAGTGTGTTTGTCATTTTTAG
Seq C2 exon
TGCTGATGGGACATATGAGGTGTCTTTCTACTCCAATGCGGTCGTGTCAAATAACGGTGAGGTTGCCTGGCTTCCACCGGCCATTTATAAGAGTGCCTGTAAAATCGAGGTCCGGGACTTTCCTTTTGACCAGCAAAACTGCACGCTCAAGTTCCGCTCCTGGACGTACGACCACACAGAAATAGACCTCATATTGCTGTCAGACTTCGCCAGTCGAGACGACTTCAAGCCCAGCGGTGAATGGGACATCGTCTCCTTGCCTGGTCGCAAAAACGAAGACCCAAATGATGTCACGTATTTGGATATAACCTACGATTTCATCATCAGACGCAAGCCACTGTTTTACACCATAAACCTGATCATCCCTTGTGTCCTCATCACCTCATTGGCCATCTTAGTTTTTTATCTCCCGTCAGACTGTGGGGAGAAAATCACATTGTGTATTTCTGTTCTCCTGGCCTTAACTGTGTTTCTCCTACTGATCTCCAAAATCGTACCCCCGACATCACTGGCCGTGCCCCTCATCGGGAAGTATTTAATGTTCACAATGGTTTTAGTGACTTTTTCTATTGTTACGAGTGTGTGTGTGCTAAATGTGCACCATCGATCGCCAAGCACACACTCTATGCCCAAATGGGTGAAATACTACTTTCTTGTACGTTTGCCTGCTTTTCTTTTCATGCGACGGCCGGGAGAGTCCAACAAACGGGATAGGTTTCGCAGGAAGCACCAGCAGCACTCTTCGTCCGATGTCCCAGTGAAGAGCGAGGCTGATGAGGCCGATTCCACCTTCTTCGTGAATGAGGATTCAGCCAATCACATCGGCTGGAGAGCAGGAGAGCTGCAAGAGAACAGCGAGCTTCGCAAGAGGATGGCGGTGAAGTGCTCGGCGGACATGGAGGAGGCTGTGAAGGGGGTTAGATACATCGCTGACAAGATGAAGAGCGAGGATGATGACGAAGGGGTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021392:ENSDART00000039985:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=FE(17.5=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=PD(54.4=34.6),PF103294=DUF2417=WD(100=47.2),PF0293211=Neur_chan_memb=WD(100=63.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]