DreINT0009111 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27732856-27733475:+
Coord C1 exon
chr5:27732856-27733079
Coord A exon
chr5:27733080-27733205
Coord C2 exon
chr5:27733206-27733475
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTCTTCTGCTGTTCTGTCAGAGT
3' ss Score
6.96
Exon sequences
Seq C1 exon
ATGTATGACAACATAGCAGCTTTGCGTTTCGATACGGGAATGAATGGAGAGATGGTGGCAAATGCACTTGTGTCTGCTGAGGGGGAGGTGATGGAGCTCAAACAGCCTGTACCTGCAGAGGGCCGCGTGGAGGACTGGATGACTGCGGTGCTGTTGGAGATGAGAAGAACCAACAGACTCATCACCAAAGAGGCTATTTACTTCTACAGCCACCAAAAGTCAAG
Seq A exon
GTAAGTCCAATATTAAATGCCATGCTACACAATCATGACCCAGCACTATCAATCTAAGCTGATCGCTTGCCTTTCTGATTATAATTTGCAAGAAGTTTATAAAATGGTCTTCTGCTGTTCTGTCAG
Seq C2 exon
AGTGGACTGGATGCTTGACTACCAGGGTATGGTGGTACTAGCAACAAACCAGGTATGGTGGACCTATGAGGTGGAAGATGTCTTCAGGAGGATGAATGAAGGAGAGAAGCAGGCACTGAAGCAGTATGCAAAGAAAATGCACCAGCAGATCAATGACCTGGTGAAACGCATCACAGAACCCTTAAAGAAGAATGACAGACGAAAAATCAACACTGTCCTCATCATTGATGTCCATGCTAGAGATATTGTGGACTCTTTTGTCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACAGCCTGTACCTGCAGA
R:
TGCATACTGCTTCAGTGCCTG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]