GgaINT0008937 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4933536-4934498:-
Coord C1 exon
chr15:4934275-4934498
Coord A exon
chr15:4933806-4934274
Coord C2 exon
chr15:4933536-4933805
Length
469 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
ACTATATGTATTTCCCATAGAGT
3' ss Score
8.64
Exon sequences
Seq C1 exon
ATGTACGATAACATAGCTTCCCTGAGGTTTCAGGATGGTGATGGTGATAAGAAAATCGTGACGGCCATGATTTCAGCTGAGGGGGAGGTGATGGATTTCCGGCAGGCTGTGGCTGCAGAGGGCAGAGTGGAGAACTGGATGACAGCAGTGCTGGGAGAAATGAGGCGAACAAACAGACGTCTTACTAAGGAAGCTATTTTTCGATACTGTGAAGACAGAAGCAG
Seq A exon
GTGAAACAATCAGTGTTAAAGACAATACAAGTACCTCATATGGTACTGTGAACCACTAGAGATACGGAAGAACAGAAACTTCATTTTCTAATTGATACACAGCTTAGCCTGTATTTCTATAATGCAGGAGGAGTATGGATACCTGCATATGTAGTATTTTAACTAACCAGAAATAATGTGTTATTTACTCTCAGTGGTTTTCCAAGTCTTGAGTTTTCATTTTTAGGAATGTGTGCACAGTTTTTCTTATTATAAATTCTGCCTTGTCATTGTTACACATAGCATAGGTTGTTTTTCATGAGAATATTTCTTAGGCTTTAGAAATAATACCTCACACCTTGATTTTATTCATCTTTATAAAGTTTTGGTCATGTTGTAGTTGTAGAAATAGGAGGAACTTCCTATTCTTTGTTGTGATCATTTACTTAAACAGTAACTCAAACTCCCATACTATATGTATTTCCCATAG
Seq C2 exon
AGTTGATTGGATGTTACTCTACCAAGGCATGATGGTGCTGGCTGCCAATCAGGTGTGGTGGACGTGGGAGGTGGAGGATGTCTTTCGGAAAGTGAAGAAAGGAGAAAAACAGGCAATGAAACTGTATGCTAAAAAAATGCACCAACAAATTGACGAGCTGGTTACTCGCATTACTGCACCTCTGAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATTATTGATGTTCATGCCAGAGACATTGTTGATACATTTGTCAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGGGAGGTGATGGATT
R:
TCGTTTTTGCTCAGAGGTGCA
Band lengths:
343-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]