HsaINT0049235 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123841322-123845869:+
Coord C1 exon
chr12:123841322-123841545
Coord A exon
chr12:123841546-123845599
Coord C2 exon
chr12:123845600-123845869
Length
4054 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAGGTGTGCGTTTTCTGCAGAGT
3' ss Score
8.29
Exon sequences
Seq C1 exon
ATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCTTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAG
Seq A exon
GTAAGGCTGCGAATGTGGACATGCATTGCTCTATCCAATTCATAGTCATAATGGATTAATTTTAAAGGCTTGGAGTAGATTGGCTGACATTCCAAATGAGGTTTTGTTTTTTTGCAATAGGTCATTAGTGGACAGATAGATGTCTTTATTTTTATTTTTTTGAGACAGGATCTTGCTCTGTCACCCAGGCTGGAATACAGTGGTACAATGGCTCACTGCAGCCTTGACCTCCCTGGTTCAAGAGATTCTCCCACCTCAGTCTTCAGTGTAGCTGGGACTACAGTTGTGCACTACCATGCCTGGCTAATTTTGTACTTTTTTGTAGAGAGGGAGTCTCACTGTGTTGCCCAGGTTGGTCTCAAACTCCTGGGCTCAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGAGCCCGGGCAGTCTTTAGCATATGTGCTGCCAAAGCGAGCACAAGATAGCAGTCTTTCAATGATCACCCGATGCAGTACTCTCAAAGTGTGCCCCCTGGTGGCAGCACAGGGCCCCTGGGATTGTTAGAAATGCTGATTCTTGGGTCTTACCCTGCACCTGCCCATCAGAACTCTGGGGGTGGGGCCTGAGGATTTGTGTTTTTGCAAGCTCTCAGGGGATTCCCAGCACCCTTAGCGTGTGAACCCCTGACTTAGTGAACCACCAGAAACTAGGCGTTTAGTGGGATTATGTGTATGTAACGTTGTTTCTAAAATATTTACTGAATTTCCAACATTCTTTGATTTTTGTGGCTAGAGAGGCTTCAGGATATCATGCTGAGCCCTGCCTGCTCCTAGCAGCTGAGTGCAGTCCAACTAGAAATACAGAAAGCCTCTTTGGCTAACTTATTCTATTAGATTAGACAGGATCCCCCGTAAAGTTGGAGAATATTTGGCAGGGCCTTCGTGCAGACATAGAATCTTTCTTGTTATTATGAGAACACCATTCTCTTGATTTTGTACACTGCCTTTTTGATTTTACAAAGTGAAAACATCTACTTAAAAATTATTAGCGAATAGCATAATATTTATTTGATTATGATCCTGCTGTTTCCGAGGTACTGAGGCATATCAAAAATTTGTTTGCATCTTTATGTGGATATGTTCAGTGGATAAACTGGTAAAACTGGATGTCTGGAAAAAATTTTTTTAAAGCTTTGATTTAAAGCAGTTGCCAATTTCCATGGTGCAAATATTCCTGCCATGGCTGATTTCAAAGCTAAATGAAATAAGTGGTTTAACAACCAGCTTGCAAAATTCCAGAATATTCGACAGTTAGTCTTGTGACAGGAGGTGGCCCTAGCATTCATTTAACTAATATTTCTTCAACCCCTGCTCTGGGCGATTTATTATGCTAGATGCTATTTCAAAACTGAACTAGACAGAAATCTCTGCCTTCTGTATGTATTAATCACTGAATGTTTTAAATTATCTTTTCTGCTCCAAAATACTGTGAAGTTTACACCAGCATCAGTTGATTTTATTTTCACGATAGCTACCACTTTGCTAGGGCATTGCTATGTTTGGTAGTGCTGAGTTGGTGGAAGAGAGTAAGGGAATGCAGCCTGATGGACTGAAAAAGATCTTTTTCTCATCCAGATGCTCCTTTGAGCACGTGAACTTGTTGCTTCCAACAGGGAGAATAGTTGACATGAGCATGTGGTTTTATTTGAGCTGATAGGTGTGGCATCACTGAGAAGTTAGGGCCAGCTGTATCTAGTCCCAGGAAGCACCTTTGCCCTGGTCATTTAATCTTCTCTGATCCTATGGCCTCAGCTGCCACCTCTCCGTTTCTGATTCTAGGTTTGTCGCGTCCTTTACAAGGCCCGTCTTTGTTCATCATTTCGGTGTCGTCCTCTGGGCCTTCGTAATCTTTGTTGTCTCTCTCCTGATGTGTAGGAATCATGGATATAAGTGATCTTTAGGTTTTCGCTGCACCACACAATTTTAAAATAAAACAACAAAGGTCAATGTTATTTTTATTGCTTTTCCTACTTATTTATTTATTTATTTATTTATTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCTATCTCGGCTTACTACAACCTCCGCCTTCCAGGTTCAAGCGATTCTCCTGCCTTAGACTTCTGAGTAGTTGGGATTACAGGTGCACATCACCACACCCGGCTAACTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCGGCCTCGGCCTCCCAAAGCGCTGGGATTACAGGCGTGAGCCAAAGCATTCGGCCTCCTACTCTTTTAAATTTATTTTGCCATTAACTGTAGGTCATCAAGATAATGACTATAGTAATCCGCAGTCACTTTTCCAGTATTGGCATTGTATTACTGTGTTTTCACACTGCTATACAGAAATACTCAAGACTGGGTAATTTATAAAGAAAAAGGTTTAATTGACTCACAGTCACGCATGGCTGGGGAGGCCTCAGGAAACTTACAGTCATGGCGGAAGACAAAGGAAAAGCAAGTACCTTTTTCACAAGGTGGCGGGAAAGAGAGAGAGAGAAGGAGGAACTAACAACCACTTATAAAACCGTCAGATCTCATGAGAACTCACTCAGTATCACGAGAACAGCATGGGGAAACCGCCCCCATGATCCAGTCACCTCCCACCAGGTCCTTCCCTCAACACCTGGGGATTATGGGGATTACAATTTGAGACGAGACGTGGGTGGGGACACAGAGCCAAACCATATCAGGCATTTACAGCTCTGAGTCCATTATTTTTTAAGTGCAGTTTAGAAAAAAAGCTTTGTCTAAATGTGTCTCAAGGCAATCACAAGCTTTGTAAGTTAGTGCCTCTGGAGAGGACATCCAAGTGGCCAATAAACATGAAAAGAGGAGAAACCCCACGACTCAGCAGGATCTGTACATTAAGGGAGGATGAGATGTTTTGTTTCACTTTTCAGACTGGCAAAAATTCAAAAGCGTGTTACAACCTGGCCTGCAAACCTGGGCAGTGTGGTCAGAGATTATGAAATTCTTTGTTGGAATTTTAATTTTCTTTCTTGAGACAGGGTCTTGCTCTGTTGCCCTGGCCGGAGTACAGTGATGCGAGCTCGGCTCACTGAAGCCTTGAGTTCCTAGGTTCAAGCAATCCTCCCACCTCAGCCTCCTGAATAGCTGGGACCACAGGCATGTACCACCACATCTGGCTAATTTTTGTATTTTTGGTAGAGACAAGGTTTCGCTGTGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGCAATCTGCCCCAGCTTGGCCTCCCATAATGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCCTGGAATATTGTTTTACTTCTTACATAAACCTCAAATACTAAGTAAGTTTGAAAACCTATAATCAAATATTTTATTTTATTTTATTTTTTAGAGACAGGGCCTTGCTCTGTCACTCAGGTTGGAGTACAGTGCACAATTGTAGTTGGCTGCGGCCTCCAACTCCTGGGCTCCAGCGCCCCTGGAGTAGCTGGGACTACAGGCATGCGTCATTATGCCTGGCTAGTTTTTAATTTATTTTTTGTAGAGATAGGGTTTTGCTATGTTGCCCAGGCTAGTCTTGAACTCCTGGCTTCAAGTGATCCTCTTCCTTGGCCTCCCAAAGTGTTGGGTTTACAGGCGTGAGCTACCACGACTGGCCCCAAACATTTAAAAAGTGATCTGGCATCTTTCTGTGCAGTCAGGTACCTGCAACATTTTTTGTGGAGAGAGGCACCCTCGGCCTGGAATTTTACTACCTAGTCGGAGATAGGTAACATCTTACTCTCACCTAAGTCTTACTCCTCTGACTTACTTAGGTAAACAAATACAGGCACTTGCTTACCTAAAACCTTTACTTTGCCCTCCCTATTCCAGATCAAAGAAATAAATTCCTGAAGGGACTGTTTTGGGTACCAGTCCCCGGATTGATCAGAGCCTCTTACAGGTGTGCGTTTTCTGCAG
Seq C2 exon
AGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCTAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGCGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCATGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(16.7=92.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development