DreINT0009123 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27744230-27744658:+
Coord C1 exon
chr5:27744230-27744361
Coord A exon
chr5:27744362-27744441
Coord C2 exon
chr5:27744442-27744658
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
AACATGTTTTTCTCCTGCAGGTG
3' ss Score
12.5
Exon sequences
Seq C1 exon
GAAAAGGCAGATCTGTGTAAACTGTTTGAAAAGTATGTGCCGAGTGCCATTGATATGATAGTGGATGGTGTGGTTGATGGTAAACAGACAGAGAAGCTAAAGACTGTAATCCTGCAGACGGATTTAAACATG
Seq A exon
GTAGGTGGGTCACCTGAATAACACTACGGTGTACATAATCTCTTTTGCTCATGAAACACAAACATGTTTTTCTCCTGCAG
Seq C2 exon
GTGATGCAGTTGACTGTTATGGTGGATTCTTTGCTGGAGAATGAGGATTTTCTTTTTGAGGAGCTGGAGTGTTGTTTCCTAGAGGCTCTCTACTGTTCACTGGGGGCTTCACTCCTCGATAAAGGCAGACAAAAGTTTGATGCTTTTATCAAAAAGCTGTCCTCTCTCAACAGTGTTCATGATGAGAAGGTGCTGGCTGGTCCTGGAGAGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(1.1=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGTGTGGTTGATGGT
R:
TGAAGCCCCCAGTGAACAGTA
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]