MmuINT0050605 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124793813-124794442:+
Coord C1 exon
chr5:124793813-124793947
Coord A exon
chr5:124793948-124794225
Coord C2 exon
chr5:124794226-124794442
Length
278 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GACAGGCGTTTTGTGACCAGGTG
3' ss Score
5.9
Exon sequences
Seq C1 exon
GTGGAGCAAAAGTATTTAAATGACCTCTTCGAGAAATATGTGCCCACTCTCATCGACATGATCATAGAGGGGATCGTGGACGGGAGGCAAGGGGAGAAGCTGAAGATGGTGGTTCCCCAGACAGACCTAAATATG
Seq A exon
GTAAGAACACTTCTCCGCTGAGGGCAAAAGGGAAGGCTTCCCGAGAGATGGTCCTGTGGGGTGGGGGAGGGGCTGACAGGGACCAGTGATGCCTCGTGGATGACTATCAGGGCATATTCTTGTGGCCCCATGCAAGCCGAGGTGCCAGGCTCCATGTGTCTGAACCAATATGGCGGCTATAGGTGCCATCACAGTGGGACAGGGGACCCCCAGGACGCAGGATAGGACGGTATCATGGGGGTCGGAAAGGTGGGCTGAGACAGGCGTTTTGTGACCAG
Seq C2 exon
GTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCCACTCTCATCGACAT
R:
CCAGTTCCCTTCCGAATCCAC
Band lengths:
292-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types