GgaINT0008949 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4927971-4928614:-
Coord C1 exon
chr15:4928480-4928614
Coord A exon
chr15:4928176-4928479
Coord C2 exon
chr15:4927971-4928175
Length
304 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTTGACTTTTTTTACGACAGGTG
3' ss Score
8.96
Exon sequences
Seq C1 exon
CAAGAGAGAATTGAATTGAATCGTTTATTCGAAAAATATGTGCCCTGCCTTATTGATATGATTACAGAGGGAATTGTGGATGGCAAACAAGAAGAAAGGCTGAAGACCATTGTTCCTCAAACAGATTTAAATATG
Seq A exon
GTGAGGAATAGAAAATAAAGGTTGAAAAAGTTTTTCTTAGAAGTGGAGCTGACTAACGAAGACAAAAGTCTCCCAAGGAAATCAGGGGTGTAGTGTTTACAGTGAAATGTCAGTTTGCTACCAAGAAACAACAGAAACAGTCAGTTCCTTACCAGTGCTGTCCTGCTGTCATTAATACTTGTATCAGTAGATACATCTGTAGCGACAAAATATCAGCAAACACTCAAACAGCTGAAAACATAGTAAGAGTTTTTACCTATCTAAATAGTGATTCTGTTCACATTTTTGACTTTTTTTACGACAG
Seq C2 exon
GTGGTTCAGCTGACTGTGATGCTGGAAGCTCTGCTTGGGGCACAACCTGATGATCCTGATGTTCTAGAGTGCTTTTTCTTGGAAGCCTTATATTTCTCTTTAGGTGCTTCTCTTCTTGATGCTGGAAGAGTTAAATTTGATAAATACATTAAACATGTTTCCTGTATGTCAACTGTTCATGATGAGAACATCCTGGCTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGAGAATTGAATTGAATCGTTT
R:
GCTTAGCCAGGATGTTCTCATC
Band lengths:
337-641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]