DreINT0009155 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27771017-27773248:+
Coord C1 exon
chr5:27771017-27771112
Coord A exon
chr5:27771113-27773076
Coord C2 exon
chr5:27773077-27773248
Length
1964 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TTTTGTTTCTTTGGTCTCAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
GTGTGTATGGAAATCTTGGACACCTATTTGACCAAAGCCCAGAATCAAGGAGATGAAATAATACCATGGGGAAGTCTGAAATACCTAATTGGAGAG
Seq A exon
GTAAACAGTTGATTAAGTTAATCATGGACTACAAGAATATTGTTAAAGCCAGAATCTATTAAATTAAAAAAGTCTCTTGCCCCTCTTTTTAAAGTGATTGAATAATCAATGAATAATGGAATAGTAACATCTGAATTTACAAAAATGACAATGGGTGTGCACAGAACTACACAAAACAATCAGTTTATGCCCAAAGATGTGTCCAAATAACCCACTGCACAGAAAAATGTGTGTTTATGTATTTATATTTATGCACTATGATGTTGACCTTTTAGTGTATTAACTCTATAAGGTTATTTTGTAAATAATCATCTTATCGATAATTATTTACACAGTTGGCATTAAGAAGGAACATATAAACGTTATTTGACTAATATTCAGCAGCTAAATGTGTCTGGAAAAATATTCAAAGGCTTTCATTTTCATAAACAGTGCAGACGTGAATGTGTCTGAGTGTTCTGATTGGCTAAAGTAGACGTCTGATGCAGCGCGTTCTAGACATGAACGCGCTCTTTCCAGCAATCTTCCTTCTGCGTTCACACAGTGAAGCCTCCTGGCAAATTACCGGTAATGTTACAACTTCTCTTTCCGGAAAATAGCCGGAATGAATTTACTGGTATTTTCAAAAAGGGCCTGTTCACAAACTCATAAGGTCTGTACGTGTGAAAGGGGCTATTGTCTGCATTTGAATGCCTTGCTCCCTTCATTACATATTTAAAGCTGCTTCAGTTGAGCGCATAAGGTGAACTATATTACACACTTTGTTTGTTCTGTTAAATAAATTCAAATTTCTTTTTAGAATTGTGAACACAAAATTTGGGATCCTGCCCCTCTGGAATTATTAGGTTTTGGTGAGCTATCAACTTATCAAAAACCTGTTGTTAGAAACCTTGGGCTTCAGTTCGATAATGATCTGAAATTTAACAAACAAGTAAATTCAGTTCTTAAATCCATTTTTTTTCCATTTACGACTTGTAGCAAAATTCATTTATCTCTTTTAATGACCTTGAGATGGTCATTCATGCTTTTATTTTGGGGAGACTTGACTATTGCAGTTCTTTGTATGAAGGGTATTAGTCAAAATGCCCTGAATTGATTGCAATTAGTCCAAAATGCGGCTGTGAAACTTCTGACAGCTATTCGCAAGTATGAGCACATACATACCACCAGTTCTTTCCTCTCTGGGCTGGCTGCCTGTTAGGTCACAGATTGATTTTTAATGAATAATTTTTGTTTATAAATCCATAAATGGTCTGGTACCACCTTACTTATCAGATCTCCAACATGTATATAATCTTGGAAAGTTACGAGGGTCTTCTGATCAGCTTATTCTCTCTGTACCAAGGCCCCAGTGCAATCGAAGAGGGGATCAGGCTTTTGCTGTTATCGTCCCAAAACTCTAGAACAAGTTTCCACCTCACATTAGACACGTTCAACTTCATCTGTTTTTAAAAAGCTTGTCTTTGTTCTTTAGCATTAGAGCCTTTTTAATGTTTAGGGGTTTGCCCTATGTTTAATTGTTATATATGTGATGTAGGATTTATTTTAATTAGTTTTATTGATGTGTTCATCACTTTGGCCAACGTTGTGTTAAAAAATGTGCTATATAAATTAACTAACTAAACTAAACTAGAAAAATGTAATAGTGCATAATTATGTGAACTGCAAAGCACAGAGGTATAAGCCTCGACTCATTTGTGTTGCCAGATCATAGACGAAAAAAAAACAGCATAAAAAAAGTAGTCGTACTACAAAGCAATACAACTGCTTTACATTTTGATGTTTATAATAATTTAGTATTTGCTGCTAAAATGTTTCAATGCCAATACATGAATAAATTAGATTTTAAAATAGTAGATGTTAAATTAAATTATTTTTTTAAATCACATTACTGTTTACTGTATTTTTCCTCATATAAATACAGCCTGGATATGTAGTGAAGTATTTTGTTTCTTTGGTCTCAG
Seq C2 exon
GTGATGTATGGCGGCAGGGTTATTGACAGCTTTGATCGTAGGATCCTCACAGTTTACACGGATGAATATCTGGGCGACTTCATCTTTGACACCTTCCAGCCCTTTCATTTCTTTCACAATGCAGATGTAGACTACAAGATCCCAGCACTTGGACCCAAGCAGGTTTACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTATGGAAATCTTGGACACCT
R:
AACGTAAACCTGCTTGGGTCC
Band lengths:
267-2231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]