MmuINT0050638 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125309143-125310066:+
Coord C1 exon
chr5:125309143-125309238
Coord A exon
chr5:125309239-125309894
Coord C2 exon
chr5:125309895-125310066
Length
656 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CTCACCCAGTCCTTCTTCAGGTC
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTCTGTATGGAAATCCTAAACACGTACCTAACGAAAGCCTTCCAGCAGCGTGACCCTCGCATCCCCTGGGGCAGCCTCAAGTACCTTATTGGAGAG
Seq A exon
GTAATGATGGCTGGGTGCCTCACGAGGGCTGGGGGTCTGAAACAGAGATACCCATCCTCTGAGCTCTTGGGACAGTCCTTGCTCCTGCCCCCGCCTACCCGTTACCACCCTAAGATCACTGAAAAGTATGCTTGCCTCCTGTTTTTCTGAGACAAACTATTCCCAGGGAAGTCACTTGTGTGAATCTAGGGCCCCGGGGCCCCTGCTAGCCTTCTCTGGGCAGTTCCCAGCTTGCCAATGCACTGAGCACATCCAGGGAGCCTTAGGGTTTTCTTGGGACATGGGTATCATGACTCTTGCAGAACTCCTAGGAAAGTTTCTAGACTGGGGAGTTCTGCAACATATAAGGACTGACAACTGGTATCTTGTTCTTGTCCATGTCTGATCCATTCAGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTTGTGTGGCTTTGGGCTGTTTCATGCTTTGGTTCTGTTCTCAGGGAGTCTCAGACCACAGCATGATTCTATAGACAAACCCATTGCTTGTCTCTCTGGCCCAAAAGGTTCTTTGAGTGGACAGATTGGAGCTGGGCGGTGGTGGGGGCTGGAGCTGTAAGTTCACATTGGGTTGTGGGTCCAGCTGGCGCTCACCCAGTCCTTCTTCAG
Seq C2 exon
GTCATGTACGGAGGCCGAGCTATTGACAGCTTCGATCGGCGCATCCTCACCACGTATATGGATGAGTACTTGGGAGACTTCATCTTCGATACTTTTCAACCATTCCACTTCTTCCGGAACAAGGATGTGGACTATAAAATCCCCGTGGGTGACATAAAGGATAAATTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:72
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTATGGAAATCCTAAACACGT
R:
ATTTATCCTTTATGTCACCCACGGG
Band lengths:
262-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: