GgaINT0008979 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4905496-4906397:-
Coord C1 exon
chr15:4906302-4906397
Coord A exon
chr15:4905668-4906301
Coord C2 exon
chr15:4905496-4905667
Length
634 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATTAGTGTAATTATTTCTAGGTC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GTCTGCATGGAAATTCTTCACACATATTTGACAAAAGCTTTCCAGCAAAACGATGATAAAATCCCTTGGAGCAGCCTCAAGTATCTTATTGGAGAG
Seq A exon
GTGAGTGCCTACATTGTCACTAAATAATCCCTGAGCTGTGTTATAACATTGGGTTGGTTCAGAATCTCTTCTGGGCAGTCTTGAAACTCCTGAGCAAGTCACTTACTCTCACTGCCTCAATAACCAGGGGCCACTGTGGTTAATTACATAACAGGGGACTGATGATGCTTAATTCTCAGAGAGCCTTTGGGATCCTCTGAGGGAAGGCACTGAGCAGCACAACTTTACAGTACTGTTAGTGCAAAGGAACGTGACTGATGTGAGAGCTGTGCAAACAGGTATTCCTAAAGCAGTGCAGTACTTGCTATGTGCTGTGTAGCAGCTGGCTGGTTCAAAGTAGCTGCTGTAACACAAAATCTTACAGGAAGTTGTTCTGATTTGGCAGCATTTAATCACAGCTGATCCTGAGCTGGCACTGAGGAAGTTACTGCTGGACGTACGTAAATACATCACCAAGACTGGCTATCAGGAGTGGCCCAGAGCAGCTCCCCTTGAGGAGCTAGAGGAGGTCTTTGAGACAGCATTATACTCACACTGTGCAGCCATTGCAATAGCAAGATGTTTCGGACCTTACTTTAAACTGTATTTGCTGCCTCAAAAGCCAGTGGTATATAATTAGTGTAATTATTTCTAG
Seq C2 exon
GTCATGTATGGTGGCCGTGCCATTGACAGCTTTGATCGTCGCATTCTGACTGTCTATATGGACGAGTACCTTGGTGATTTCATATTTGACACATTCCAAACATTTCATTTTTACAAAAATGATGAGGTTGATTACAGGATTCCCCAAGGGACTGTAAAAGATGACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCATGGAAATTCTTCACACA
R:
AGTCATCTTTTACAGTCCCTTGGG
Band lengths:
262-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]