DreINT0009166 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19413481-19414933:-
Coord C1 exon
chr16:19414760-19414933
Coord A exon
chr16:19413717-19414759
Coord C2 exon
chr16:19413481-19413716
Length
1043 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGA
5' ss Score
7.63
3' ss Seq
CCTCACACCTCGTGATCCAGACC
3' ss Score
3.4
Exon sequences
Seq C1 exon
GCAGAAAATGTGCGCTGGTCGGAGGGTCAGCTGGAGCTGGAGGGTCAGCTGAAGACTGTGTGTGGTGATGTGCTCATAGCAGCTGCTTTTGTCTCCTACGCTGGATATTTCACACAGCCATATCGCCATCAGCTCCTTCACGACATGCTGATTCCTTTCCTCAGAGAACTCCGG
Seq A exon
GTATGATTTCTGCTTCACATTATTCTCAGTTGTCATTTTTTGGGGACATGCAGTATAGTGGTTAAATAGGTATTGGAAGTAGTTATTTCATATTATTACATTTTAGTTGTATTGTTATTATTATTATTTTGTGAAAATGTGGTTTTGCTTGGTAAAAGAATACCTATAAAAAGTATAAGTCCACTGAATGGATGCAATGTTCTCAAAAAAATAAAAATAAGTTCTTTAGATCTTTACTTTTCTAACAAAGACATTAGTAAATCAAGAAATATTTATACTAGAAAAGAACTAATCATTTAAGAGTAATGTAATCCTTATAGAGGTAAACTAATTGTCCACACTTTTTGTTTTTGTATTATTTCTAGTCTAAGTAGATTAGGTAACAATTTATTTTGATGACCCATTTGAGTGTTAGTACACTGTCTGCTTAATATCTGTTTATACTGCTCCTTAAAAGGACATTTTACTGACTATAAGAAACTTTGCAAGTACATGTCAACTTGCACTAACCCTAACCCCAACCCCAACCCCAACCTAACAGTCTTCTTATAATCTAATGAGAATTAGTTTGCATGTAGATGCAATGTAATTTAATTCAACAGAGAGACCATCAACATAAATTGTGACCAAAGATTACCTTGATTTAGTTTTGAAATAAGATTATTTTGCTTACCCTGTTGGCAGATTAGTTTGCTTGTTTTAAGGACTAACTTGCTTAATTTTAAGTAAATGCTTCGTGATTTAGGCATTTTTAAATATTTGGACTTAACACTAACAAAAACACTAGTTAATAGAATGATTTTTTTCAGTGCATATTACTGAATGATAAAGTTCTGTGCAGGTACATCATGCAGATAATGACTGTGATATTATGACATTAAACAACCCTCTCGTCAAGGTTAAGAGTGTTTTTGGATCATTGTTTCTTCCTGAGCTGTCTACTGTAAAATCCTGTTACCATACAACTGTGTCTGCCCTCCAGTGGAGCGTTGAATTGAATAGCATCACTGTCTGTCTTCCTCTCCTCACACCTCGTGATCCAG
Seq C2 exon
ACCCCTGTCCCGCTGACAGACGGTCTGGACCCTGTACTTATGCTGACTGACCAGGCCACTGTGGCAGGCTGGCAGAACCAGGGCCTGCCAGCTGATCGGCTGTCCATTGAAAACGCAGCCATCCTAAAGTCCAGCCAGCGATGGCCTCTGATCGTGGATCCTCAGCAACAGGCCAGCAAGTGGATCCGAAACCTGTACGGGCCCAGCCTGAGAGTGCTGCAGTATGGTCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(15.4=91.4)
A:
NA
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGTGGTGATGTGCTC
R:
CATACTGCAGCACTCTCAGGC
Band lengths:
346-1389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]