DreINT0009171 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19402774-19404730:-
Coord C1 exon
chr16:19404590-19404730
Coord A exon
chr16:19402945-19404589
Coord C2 exon
chr16:19402774-19402944
Length
1645 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTGTATATCTTACATTTTAGGCC
3' ss Score
9.4
Exon sequences
Seq C1 exon
GCTGTTGCAGCTCGAGAGAATGAGATAAAGACCAACGAGGCACGAGATCTCTACAGGCCAGCAGCTGAGAGAGCCGCACTGCTCTACTTCATTATTAAAGAACTTCACAATGTTAATCCCATGTACCAGTACTCCCTCAAG
Seq A exon
GTAACACACTACACATCTGCCTTATTTACAGTAGTTCAGATAAATAGCTCTAGAATTTGTTTTGCCATTTTGTACGGTTGATTTGTGCATTTATGAATGACAAATCACAATCGAGTGTGAACCAAAAACAGAAAAAATAAGTTTACTGAGACCTGGGCCATGGTATTATGAAGCAGCTGAGCAATGTTCATGGTACATAAAACCCAGAACTGGTGCTTACTAAACTGAAACTTAACTGGCGAGCTTGCTAATCTGGCTTTATGGTACAGGCCCCTGCTACTCGGTGTGCTTTCAGATAAACACTGGAGCAGTTAATTTGGGGTTAGAACATAATCTAAACTTGAACAGACCAAAATGCAAAAAAATATATACTTTTTTTTTTTTTTTTGACTAAGTCAGCAACCATAGTCAACTGTGCTGTGTATTATTATAGAATGAAGGCAAGAATTTGTTTACAGGCCTTAAGCAACAGCTCTATTGTAAGCACAGCTTGTGGACAAGCTTTTAAAATGACTTGTAATAGATAAAAAATTTCTTTTAAATATATATTTTTTAAAATTACATTGTAATATGCATTCTGGTGGATCAGGTTTAACCAAGAGGCAGTATTGTTTCTCCAAAGTAATGTAAGTTATAAGTTCTAGCCTAGGCACATCAGGTCTTACTGTCTATGTGTGAAGCAGTATCATGTCTCCAAAGTAAATCATATTGTAGGTCCCAGGCATGTCTTTTTTTTTTGTATTTAACTGAGAGCCAGGTTGCAGTAGTGGAGATTTTTCGGTGAATGACAGTAACAGCAAGTTGTCATTAAAGGATTCTGCTTTGAAGACACCGGAAATTTCTCCTGGTTTGTCTCTCCTTTAATTCACAACAAATGACAAAACAAGTTAAACATGGCTAGCAATTTCTCTGCTCCAAACCAGCTAAAACTACTTACATATTTCTACAAAACTCCCGAAAGCAAACCAAGAGCGGCAGAAAAATCAGCAGACAACATGTCAGTGGTTTTAGTATGCAGAAACAACTGGCTGACTGTATTCCTAGTCATTACATGTTATACAGTTTTAATGCATCACTTCCGACAAACTATACATTTTGAGAATTATGTGAGATTCAGTTTGAAAACAATGTTTTAATGCTCTGCAAATGGTGAAGTCGCATCGCAAGTGTTGTGAATTGAAGAAGAGACAAACCAGAGGAAATTTTGATCATCTTCAAAGCAGAATCCTTTAATGAGAGCTTGCCGTCGCTGTGTTGTTCACCCCAAAAACCTGGGCTACTGCAGCCTGGCACTCAAAATAAATACACAATTTTTGTGGCAGTTTTTGTTGGTAGATACATTAACCGCCATTACAGGATTAGTAGAAAATCGTGCATCTAACCCAGTTAAGTCATTAAATTTCACTTTAAGGTCAATACCAGTTTTTTTGCAAATAAACTGCCATGTTATGCATCATTGTCATAACAAAGGCAAAATAAATGAGATAATAGATGTTAGTTTGTAAAAGGTTTTTAGAAATTTGCTTTTAGAACTATTTTGTTTAAAATGTGTTATAAAAAACATCTTATAGAAATAAACAGCACTTGGAAAAGAATTTAAAAAAATCTAATCATTTTGTCTTCAACTGTATATCTTACATTTTAG
Seq C2 exon
GCCTTCAACAAAGTGTTCCTAAAAGCTATTGCGAGAGCTCCAAGTGATGAAGATGTATCGGTGCGTGTTTTATCTCTGACCGAGTCCATTACCCATTCAGCCCTTCAGTACACCTGCCAGGGGCTCTTCCAGCGGGACCGACTCACCTTCCTCACCCACACCGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCAGCTCGAGAGAATGA
R:
GGTGTGGGTGAGGAAGGTGAG
Band lengths:
302-1947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]