GgaINT1011534 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10092234-10092663:+
Coord C1 exon
chr18:10092234-10092374
Coord A exon
chr18:10092375-10092492
Coord C2 exon
chr18:10092493-10092663
Length
118 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCCCGGCTCTCTGTTAGGCA
3' ss Score
5.96
Exon sequences
Seq C1 exon
GTGAAGGAGTCCAAAGTCACAGAGGTGGAAATAAACGTGGCCAGGGAGAACTACCGGCCAGCAGCAGAACGAGCATCCCTGCTGTACTTCATCCTGAGCGACCTCAACAAAATCAACCCCATCTACCAGTTCTCCCTAAAG
Seq A exon
GTGAGCACAAGGCAAGGTGGCGGTGGCTTTCTGTGGAGAAGGGGTTGGGTATTTCATCATGAACGCCTCTAACAGTGTGCCCAAAGCACAGCACTGAGCCCCCCCGGCTCTCTGTTAG
Seq C2 exon
GCATTCAGTGTGGTCTTTGAGAAAGCCATCCAACGAACAGCTCAGGCTGAGGACGTGGGGCAGCGGGTGATCAACCTGACAGACGAGATCACCTACTCCGTCTTCATGTACACCGCCCGCGGGCTCTTTGAGAAGGACAAACTCATCTTCCTGGCCCAGATTGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATAAACGTGGCCAGGG
R:
TTGTCCTTCTCAAAGAGCCCG
Band lengths:
256-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]