BtaINT0050386 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54389741-54390272:+
Coord C1 exon
chr19:54389741-54389872
Coord A exon
chr19:54389873-54390101
Coord C2 exon
chr19:54390102-54390272
Length
229 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
GCCTCCGGTGACACCCCCAGGCC
3' ss Score
6.02
Exon sequences
Seq C1 exon
GCAAAAATCACAGAAGTTAAAATCAACGAGGCGAGAGAGAACTACCGGCCGGCCGCAGCGAGGGCATCCCTGCTGTACTTCATCCTGAACGACCTCAACAAGATCAACCCCATCTACCAGTTCTCACTCAAG
Seq A exon
GTGCGGCTGCCTCCAGGCCCGGGGCTGTGGCCCTCGGGTCCGGGCTGCAGGTGTCCGTGAGGGGCGGGAGTCGGGGCACCAGGTCTGACCAGCACCAGCCCAGGGAGTGAGGGTCCGAGCAGTGCCCCCAGACCCCGAACCCCAACGGAAACCAACCAGAGCCAGCATGGGCGGCGTGGAGCAGGCTCAGGGGCCGTGCCCAAGCCCCTGCCTCCGGTGACACCCCCAG
Seq C2 exon
GCCTTCAACGTGGTGTTCGAGAAGGCCATCCTGAAGACCACCCCCGCCGACGAGGTCAAACAGCGCGTGATCAACCTGACGGACGAGATCACCTACTCGGTGTTCATGTACACGGCCCGCGGGCTCTTCGAGCGCGACAAGCTCATCTTCCTCGCACAGGTGGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGTTAAAATCAACGAGGCG
R:
GAAAGGCCACCTGTGCGAG
Band lengths:
292-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development