HsaINT0049575 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78449414-78450394:-
Coord C1 exon
chr17:78450254-78450394
Coord A exon
chr17:78449585-78450253
Coord C2 exon
chr17:78449414-78449584
Length
669 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TCTCGGTGGCGGATCCCCAGGCC
3' ss Score
4.05
Exon sequences
Seq C1 exon
GTGGTGGAGGCAAAAATCACAGAAGTTAAAATCAACGAAGCGAGAGAGAACTACCGCCCGGCTGCGGAGAGGGCATCTCTGCTCTACTTCATACTGAACGATCTCAACAAAATCAACCCCGTCTACCAGTTCTCCCTCAAG
Seq A exon
GTGCGCCCTGCAGCTGGGGCTGGGTGCCTCCCTCAAGGTGGGGCTGCATCTGGGCTCCACAGCCAGGCCTGTTGCCCACACAGCCATCGGGCAGTGCCAGGGCCACCCTCAGAGGGCAGACCTGGTCCAGCCTGCAGATGGAGCTGGAAGAGGGGGAGCCAGGGGCCCCCATCAGTCCTACACCCATTCTCCCCAGGAGAGGGTATGAGCTGCTCCCTCCTCCCTGCTCTTCCCCTGGTGCCTCCAGGCACTCACAACCCAATCAAAACAAACTGGATGGCCTGGCATGGTGGCTCATGCCTGTCATCTCAGCACTATGGGGGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCTGTCTGTACTAAAAATAAAAAAAAATTAGCCAGGTGTGGTGGTGTGCGCCTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACACTGCAACCTCCCTCACTGCAGAGGGTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAGAAACAAAACAAACTGGAGGCCACCACAGGTGGCAGGGAGTGGTGGCGGGGAGTGGTGAAGGGCTCCATCTCTGCACGCCTCCATGGCTCTCGGTGGCGGATCCCCAG
Seq C2 exon
GCCTTCAACGTGGTGTTTGAGAAAGCCATCCAGAGGACCACCCCTGCCAACGAGGTGAAGCAGCGGGTGATCAACCTGACGGACGAGATCACCTACTCCGTCTACATGTACACGGCCCGGGGACTCTTCGAGAGGGACAAACTCATTTTCCTGGCACAAGTTACGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGGCAAAAATCACAGA
R:
TGAAACGTAACTTGTGCCAGGA
Band lengths:
310-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development